Transcriptomics,Genomics

Dataset Information

158

High throughput sequencing of small RNAs from black pepper (Piper nigrum L.)


ABSTRACT: In this study, we used the illumina high throughput sequencing approach (Sequencing-By-Synthesis, or SBS) to develop the sequence resource of black pepper. To identify micro RNAs functioning in stress response of the black pepper plant, small RNA libraries were prepared from the leaf and root of Phytophthora capsici infected plants, leaves from drought stressed and control plants. Overall design: Stress responsive small RNAome profiling from black pepper

INSTRUMENT(S): Illumina HiSeq 2000 (Piper nigrum)

SUBMITTER: Soniya E V  

PROVIDER: GSE65782 | GEO | 2017-08-24

SECONDARY ACCESSION(S): PRJNA275003

REPOSITORIES: GEO

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Publications

Transfer RNA Derived Small RNAs Targeting Defense Responsive Genes Are Induced during Phytophthora capsici Infection in Black Pepper (Piper nigrum L.).

Asha Srinivasan S   Soniya Eppurath V EV  

Frontiers in plant science 20160601


Small RNAs derived from transfer RNAs were recently assigned as potential gene regulatory candidates for various stress responses in eukaryotes. In this study, we report on the cloning and identification of tRNA derived small RNAs from black pepper plants in response to the infection of the quick wilt pathogen, Phytophthora capsici. 5'tRFs cloned from black pepper were validated as highly expressed during P. capsici infection. A high-throughput systematic analysis of the small RNAome (sRNAome) r  ...[more]

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