Transcriptomics,Genomics

Dataset Information

33

Whole genome tomato transcriptional response to tomato-adapted and non-adapted Tetranychus urticae herbivory


ABSTRACT: Generalist arthropod herbivores rapidly adapt to a broad range of host plants. However, the extent of transcriptional reprogramming in the herbivore and its hosts associated with adaptation remains poorly understood. Using the spider mite Tetranychus urticae and tomato as models with available genomic resources, we investigated the reciprocal genome-wide transcriptional changes in both spider mite and tomato as a consequence of mite’s adaptation to tomato We used microarray to assess global gene expression in Solanum lycopersicum cv. Moneymaker upon Tetranychus urticae attack by tomato-adapted and non-adapted spider mite lines. Overall design: 1 month old tomato plants were subjected to Tetranychus urticae attack through application of 100 adult mites on a terminal leaflet of leaves 3 and 4 for 24 hours (200 mites per plant).

INSTRUMENT(S): Affymetrix EUTOM3 tomato exon array [CDF: EUTOM3_exon]

SUBMITTER: Vladimir Zhurov  

PROVIDER: GSE70375 | GEO | 2015-07-20

SECONDARY ACCESSION(S): PRJNA288470

REPOSITORIES: GEO

altmetric image

Publications

Adaptation of a polyphagous herbivore to a novel host plant extensively shapes the transcriptome of herbivore and host.

Wybouw Nicky N   Zhurov Vladimir V   Martel Catherine C   Bruinsma Kristie A KA   Hendrickx Frederik F   Grbić Vojislava V   Van Leeuwen Thomas T  

Molecular ecology 20150903 18


Generalist arthropod herbivores rapidly adapt to a broad range of host plants. However, the extent of transcriptional reprogramming in the herbivore and its hosts associated with adaptation remains poorly understood. Using the spider mite Tetranychus urticae and tomato as models with available genomic resources, we investigated the reciprocal genomewide transcriptional changes in both spider mite and tomato as a consequence of mite's adaptation to tomato. We transferred a genetically diverse mit  ...[more]

Similar Datasets

2015-01-05 | E-GEOD-61074 | ArrayExpress
2015-01-05 | E-GEOD-61075 | ArrayExpress
2011-11-23 | E-GEOD-32342 | ArrayExpress
| GSE68708 | GEO
| GSE49981 | GEO
2013-11-25 | E-GEOD-49981 | ArrayExpress
2011-11-23 | E-GEOD-31525 | ArrayExpress
| GSE85813 | GEO
| GSE115942 | GEO
2017-01-17 | PXD003022 | Pride