Transcriptomics

Dataset Information

19

ASFV array analysis


ABSTRACT: African swine fever virus (ASFV) produces a fatal acute hemorrhagic fever in domesticated pigs that potentially is a worldwide economic threat. Using an expressed sequence tag (EST) library-based antisense method of random gene inactivation and a phenotypic screen for limitation of ASFV replication in cultured human cells, we identified six host genes whose cellular functions are required by ASFV. These included three loci, BAT3 (HLA-B-associated transcript 3), C1qTNF (C1q and tumor necrosis factor-related protein 6), and TOM40 (translocase of outer mitochondrial membrane 40), for which antisense expression from a tetracycline-regulated promoter resulted in reversible inhibition of ASFV production by >99%. The effects of antisense transcription of the BAT3 EST and also of expression in the sense orientation of this EST, which encodes amino acid residues 450 to 518 of the mature BAT3 protein, were investigated more extensively. Sense expression of the BAT3 peptide, which appears to reversibly interfere with BAT3 function by a dominant negative mechanism, resulted in decreased synthesis of viral DNA and proteins early after ASFV infection, altered transcription of apoptosis-related genes as determined by cDNA microarray analysis, and increased cellular sensitivity to staurosporine-induced apoptosis. Antisense transcription of BAT3 reduced ASFV production without affecting abundance of the virus macromolecules we assayed. Our results, which demonstrate the utility of EST-based functional screens for the detection of host genes exploited by pathogenic viruses, reveal a novel collection of cellular genes previously not known to be required for ASFV infection. Set of arrays organized by shared biological context, such as organism, tumors types, processes, etc. Keywords: Logical Set Overall design: Computed

INSTRUMENT(S): SHEN

ORGANISM(S): Homo sapiens  

SUBMITTER: Stanford Microarray Database   

PROVIDER: GSE7581 | GEO | 2007-08-09

SECONDARY ACCESSION(S): PRJNA100325

REPOSITORIES: GEO

altmetric image

Publications

Sorry, this publication's infomation has not been loaded in the Indexer, please go directly to PUBMED or Altmetric.

Similar Datasets

2011-10-12 | E-SMDB-3898 | ArrayExpress
2014-05-02 | E-GEOD-7581 | ArrayExpress
| phs000937 | dbGaP
2012-05-04 | GSE17012 | GEO
2018-07-23 | GSE101368 | GEO
2014-05-02 | E-GEOD-17012 | ArrayExpress
2014-06-02 | E-GEOD-41300 | ArrayExpress
2012-03-27 | E-GEOD-6106 | ArrayExpress
2015-05-30 | E-GEOD-66727 | ArrayExpress
2016-02-22 | E-GEOD-71292 | ArrayExpress