Transcriptomics

Dataset Information

19

Nicotiana benthamiana Transcriptome or Gene expression


ABSTRACT: N. benthamiana plants were grown under 16 hour light/8 hour dark cycle in a plant growth room at 24°C for approximately six weeks before subjected to virus-induced gene silencing. Agrobacterium stain GV2260 (OD600=1.0) carrying silencing constructs were infiltrated into 2 fully expended leaves for inducing gene silencing. Samples were collected at 8, 10, 12, 14, and 16 days post Agro-inoculation (DPI) for RPN9-silenced plants and N-silenced control. For RPN8-silencing, samples were collected at 8, 10, and 12 DPI, and the empty vector treated plants were used as a control. Each sample was a pool of 6 silenced leaves collected from 3 individual plants. All the samples were in biological triplicates from 3 sets of independently silenced plants. Total RNA was extracted using Trizol and DNA was removed with DNase I treatment before cDNA synthesis. Keywords: Reference design Overall design: 25 hybs total

INSTRUMENT(S): Potato 10k cDNA array version 4

ORGANISM(S): Nicotiana benthamiana  

SUBMITTER: Jia Liu   

PROVIDER: GSE8259 | GEO | 2007-09-01

SECONDARY ACCESSION(S): PRJNA101213

REPOSITORIES: GEO

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