Transcriptomics,Genomics

Dataset Information

151

Characterize novel lncRNAs responding to stresses in Oryza sativa at transcriptional and post-transcriptional levels


ABSTRACT: We performed poly(A)+, poly(A)-, nuclear, small RNA-seq analysis on Oryza sativa japonica WT plants. Overall design: We treated the seedlings under the stress conditions, including cold, drought, heat, high-salt, and high-light. Also, we choose two tissues, roots and panicles for RNA sequencing.

INSTRUMENT(S): Illumina HiSeq 2000 (Oryza sativa Japonica Group)

SUBMITTER: Jiapei Yuan  

PROVIDER: GSE86215 | GEO | 2018-06-13

REPOSITORIES: GEO

altmetric image

Publications

Stress-responsive regulation of long non-coding RNA polyadenylation in Oryza sativa.

Yuan Jiapei J   Li Jingrui J   Yang Yang Y   Tan Chang C   Zhu Yumin Y   Hu Long L   Qi Yijun Y   Lu Zhi John ZJ  

The Plant journal : for cell and molecular biology 20180116 5


Recently, long non-coding RNAs (lncRNAs) have been demonstrated to be involved in many biological processes of plants; however, a systematic study on transcriptional and, in particular, post-transcriptional regulation of stress-responsive lncRNAs in Oryza sativa (rice) is lacking. We sequenced three types of RNA libraries (poly(A)+, poly(A)- and nuclear RNAs) under four abiotic stresses (cold, heat, drought and salt). Based on an integrative bioinformatics approach and ~200 high-throughput data  ...[more]

Similar Datasets

2018-04-11 | PXD005241 | Pride
2012-07-03 | GSE26405 | GEO
2007-02-21 | GSE6996 | GEO
2012-05-20 | BMID000000141346 | BioModels
| GSE30707 | GEO
2005-04-09 | GSE2500 | GEO
| GSE33441 | GEO
2012-07-01 | GSE30462 | GEO
| GSE36320 | GEO
| GSE24977 | GEO