Transcriptomics,Genomics

Dataset Information

45

Seasonal changes of gene expression of eyes in Medaka fish (Oryzias latipes)


ABSTRACT: To examine the seasonal adaptation, we compared the gene expression of eyes between SL (short-day and low-temperature conditions: 10 h light/14 h dark and 8 °C) and LD (long-day and warm-temperature conditions: 14 h light/10 h dark and 26 °C) conditions in Medaka fish (Oryzias latipes). Overall design: The gene expression of eyes was measured at 16 hours after light onset (zeitgeber time: ZT16) on days 0, 1, 2, 3, 5, 7, and 14 after transfer from SL to LD conditions. For each time point, cRNAs prepared from pooled eyes (n=3) were hybridized to duplicate sets of microarrays.

INSTRUMENT(S): Agilent-071197 Oryzias latipes array (Probe name version)

SUBMITTER: Tsuyoshi Shimmura 

PROVIDER: GSE94258 | GEO | 2017-09-01

SECONDARY ACCESSION(S): PRJNA369208

REPOSITORIES: GEO

altmetric image

Publications


To cope with seasonal changes in the environment, organisms adapt their physiology and behavior. Although color perception varies among seasons, the underlying molecular basis and its physiological significance remain unclear. Here we show that dynamic plasticity in phototransduction regulates seasonal changes in color perception in medaka fish. Medaka are active and exhibit clear phototaxis in conditions simulating summer, but remain at the bottom of the tank and fail to exhibit phototaxis in c  ...[more]

Similar Datasets

2007-08-24 | E-TABM-285 | ArrayExpress
| GSE28370 | GEO
| PRJNA369208 | ENA
2016-02-14 | E-MEXP-3508 | ArrayExpress
2008-01-18 | E-MEXP-1304 | ArrayExpress
2011-06-29 | GSE22585 | GEO
2012-02-21 | GSE27926 | GEO
2013-12-14 | E-GEOD-53288 | ArrayExpress
2011-06-29 | E-GEOD-22585 | ArrayExpress
| GSE76607 | GEO