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Whole genome developmental time course of Tn5 transposon accessible chromatin patterns in sea urchin embryos

ABSTRACT: We have adapted ATAC-seq to sea urchin embryos. As a proof of concept, we documented strong ATAC-seq signals over the locations of a number of previously authenticated, developmentally active, cell type specific cis-regulatory modules. We then used the method to generate a systematic developmental series for embryos from three independent batches, obtained every six hours from blastula stage until completion of embryogenesis at 72h. The independent batches provide internal reproducibility controls.

ORGANISM(S): Strongylocentrotus purpuratus

PROVIDER: GSE95651 | GEO | 2017/03/03

SECONDARY ACCESSION(S): PRJNA377768

REPOSITORIES: GEO

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