Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

GNPS - Sandwithia guyanensis extract and fractions

ABSTRACT: Untargeted LC-MS/MS in positive ionisation mode of extract and fractions of Sandwithia guyanensis bark (collected in French Guyana)

INSTRUMENT(S): 6520A Quadrupole Time-of-Flight LC/MS

ORGANISM(S): Sandwithia Guyanensis (ncbitaxon:316729)

SUBMITTER: David Touboul

PROVIDER: MSV000081542 | GNPS |

REPOSITORIES: GNPS

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

GNPS - Larix decidua fractions

Project description:Untargeted LC-MS/MS in positive ionisation mode of fractions of Larix decidua bark (collected in Champardennais forest, France)

2023-06-07 | MSV000092118 | GNPS

Analysis of Plasma Membrane, Endosomal and Cytoplasmic fractions of mouse embryonic fibroblast

Project description:This project aimed to identify novel endosomal proteins and therefore cellular fractionation experiments were performed. Adherent mouse embryonic fibroblast were scraped on ice into hypotonic lysis buffer (10 mM HEPES-KOH pH 7.2, 0.25 M sucrose, 1 mM EDTA, 1 mM MgOAc and protease & phosphatase inhibitors (PhosSTOP and Complete mini tablets from Roche). Cell membranes were fragmented with French Press and nuclei removed with 10 min 1000 x g centrifugation. Plasma membrane fraction was collected with 10 min 10 000 x g centrifugation and endosomal/cytoplasmic fractions with 1h 100,000 x g centrifugation. Membrane fractions were washed at least once with lysis buffer and cytoplasmic fractions were centrifuged twice. All fractionation steps were performed at +4°C or on ice. All fractions were dissolved in sample buffer for immunoblotting

2015-10-14 | PXD001870 | Pride

Gene expression data from pre-adipocytes 3T3-L1 treated with Tsuruazuki Extract (Tsuru)

Project description:Gene expression profiling of pre-adipocytes 3T3-L1 reveals anti-adipogenic potential to metabolic associated diseases through whole transcriptomic analysis. We evaluated the effects of Tsuruazuki extract on pre-adipocytes 3T3-L1. We performed an untargeted whole-genome transcriptome analysis to explore functionality of Tsuru on 3T3-L1 cells.

2024-09-30 | GSE278053 | GEO

Transcriptomic response of Mycobacterium tuberculosis to artemisinin, Artemisia annua extract, and Artemisia afra extract

Project description:We sought to determine the transcriptomic impacts of artemisinin, Artemisia annua extract, and Artemisia afra extract on M. tuberculosis. Log phase cultures were treated with lethal doses for four hours or with inhibitory or sub-inhibitory doses for 24 hours. RNA was collected from untreated controls at the same timepoint.

2023-09-28 | GSE244235 | GEO

SFE Stillingia

Project description:GNPS SFE associated files. Standard extract sample - Untargeted LC-MS/MS in positive ionisation mode.

2018-06-21 | MSV000082485 | MassIVE

Gene expression data from 3D spheroids of human amniotic epithelial stem cell (hAESC) treated with Tsuruazuki Extract (Tsuru)

Project description:Gene expression profiling reveals mesoderm lineage-specific genes were more significantly regulated with the most prominent regulated DEGs were identified in adipose tissue. We evaluated the effects of Tsuruazuki extract on human amniotic epithelial stem cells. We performed an untargeted whole-genome transcriptome analysis to explore functionality of Tsuru in a stem cell-based tool.

2024-09-30 | GSE278052 | GEO

Codiaeum peltatum

Project description:Standard extract sample - Codiaeum peltatum. Untargeted LC-MS/MS in positive ionisation mode. Raw and processed data.

2018-06-21 | MSV000082484 | MassIVE

Exploration prebiotic effect French Maritime Pine Bark Extract on Gut Microbiota of children with ADHD

Project description:Impact of French Maritime Pine Bark Extract and Methylphenidate on the Gut Microbiota of paediatric Attention-Deficit Hyperactivity Disorder Patients

| PRJEB65903 | ENA

GNPS Euphorbia pithyusa (plant) extract and fractions

Project description:Euphorbia pithyusa data were performed on Q-TOF agilent instrument. Extract of aerial parts of plant and the chromatographic fractions were analyzed in untargeted LC-MS/MS mode.

2017-04-18 | MSV000080965 | GNPS

DSSO Crosslinking of IEX column fractions from Tetrahymena cilia extract fractionation.

Project description:Procedure details are reported in McCafferty et al. eLife2022;11e81977. Briefly cilia extract from Tetrahymena thermophila SB715 was fractionated on a mixed bed IEX HPLC column and all resulting fractions were crosslinked by addition of DSSO to 0.5mM. Following reduction, alkylation, trypsin digestion, and desalting, mass spectra were collected on an Orbitrap Fusion Lumos using a DDA MS2-MS3 method and spectra were processed in ProteomeDiscoverer 2.3 using the Xlinkx node to identify crosslinks. The look-up database for crosslink identification was generated from the same .RAW files using a standard Basic workflow to identify proteins present in the fractions.

2023-04-20 | MSV000091761 | MassIVE

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data