Proteomics

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A Landscape map of multiple posttranslational modifications in hepatocellular carcinoma


ABSTRACT: Here, we established a comprehensive database profiling the proteome of total proteins and those containing nine major PTMs: phosphorylation, acetylation, crotonylation, lactylation, ubiquitination, succinylation, malonylation, β-hydroxybutyrylation, and N-glycosylation in the normal adjacent tissues (NATs) and tumor tissues of HCC patients. This multiomics study robustly identified thousands of PTM sites and proteins, including 7,637 proteins; 28,849 phosphosites; 4,035 N-glycosyl sites; 8,098 acetyl sites; 19,713 crotonyl sites; 6,663 β-hydroxybutyryl sites; 3,191 malonyl sites; 5,692 succinyl sites; 6,535 lactosyl sites; and 21,453 ubiquitinated sites. Among these, 6,262 proteins; 6,776 phosphosites; 1,500 N-glycosyl sites; 2,746 acetyl sites; 7,874 crotonyl sites; 2,793 β-hydroxybutyryl sites; 1,072 malonyl sites; 2,107 succinyl sites; 1,107 lactosyl sites; and 2,765 ubiquitinated sites were quantified, with less than 50% missing values across samples.

ORGANISM(S): Homo Sapiens

SUBMITTER: Beicheng Sun  

PROVIDER: PXD058966 | iProX | Wed Dec 18 00:00:00 GMT 2024

REPOSITORIES: iProX

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Publications

Deciphering a profiling based on multiple post-translational modifications functionally associated regulatory patterns and therapeutic opportunities in human hepatocellular carcinoma.

Lao Yuanxiang Y   Jin Yirong Y   Wu Songfeng S   Fang Ting T   Wang Qiang Q   Sun Longqin L   Sun Beicheng B  

Molecular cancer 20241228 1


<h4>Background</h4>Posttranslational modifications (PTMs) play critical roles in hepatocellular carcinoma (HCC). However, the locations of PTM-modified sites across protein secondary structures and regulatory patterns in HCC remain largely uncharacterized.<h4>Methods</h4>Total proteome and nine PTMs (phosphorylation, acetylation, crotonylation, ubiquitination, lactylation, N-glycosylation, succinylation, malonylation, and β-hydroxybutyrylation) in tumor sections and paired normal adjacent tissue  ...[more]

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