CPTAC, TCGA Cancer Proteome Study of Ovarian Tissue

ABSTRACT: Explore This Study at the NCI Proteomic Data Commons

Global proteome data have been acquired for 174 TCGA ovarian cancer tumor samples by 2 Proteome Characterization Centers (PCCs), Pacific Northwest National Laboratory (PNNL) and Johns Hopkins University (JHU). Both PCCs used iTRAQ (isobaric Tags for Relative and Absolute Quantification) protein quantification methods. Thirty-two of the 174 TCGA tumor samples were assayed at both sites yielding a total of 206 proteome characterizations. Glycoproteome (122 tumors) and phosphoproteome (69 tumors) analyses were also conducted, at JHU and PNNL respectively.

Information on the complete TCGA Ovarian Serous Cystadenocarcinoma (OV) cohort can be found here.
The Cancer Genome Atlas Research Network published on the Genomic characterization of the OV cohort in Nature on June 30, 2011

Genomic data for the 174 TCGA samples used in the CPTAC Proteome study can be downloaded from here.

• Dataset imported into MassIVE from https://cptac-data-portal.georgetown.edu/cptac/s/S020 on 08/26/19
• Dataset source: https://pdc.esacinc.com/pdc/browse/filters/study_name:...

OTHER RELATED OMICS DATASETS IN: PAe005191 PAe005196 PAe005192 PAe005122 PAe005304 PAe005186 PAe005188 PRJNA225826 phs000178.v6.p6

INSTRUMENT(S): LTQ Orbitrap Velos, Q Exactive

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

SUBMITTER: Richard Smith   Hui Zhang  

PROVIDER: MSV000084252 | MassIVE | Thu Aug 29 00:42:00 BST 2019

SECONDARY ACCESSION(S): PXD015903

REPOSITORIES: MassIVE