Microbial Co-Culture Circadian Control Proteomics
Ontology highlight
ABSTRACT: Mono and co-cultured (dense OD) S. elongatus and R. toruloides with light vs dark treatment. TMT16 fractions for redox and global proteomics. Samples were processed using the SP3-based multi-PTM workflow (Gluth et al, 2024, MCP). Data was searched with MS-GF+ using PNNL's DMS Processing pipeline. PlexedPiper was used to link peptide identifications with MASIC quantification data. Normalization was performed using the global median method, and redox data were further normalized to the corresponding global dataset.
INSTRUMENT(S): Q Exactive Plus
ORGANISM(S): Rhodotorula Toruloides (ncbitaxon:5286) Synechococcus Elongatus Pcc 7942 (ncbitaxon:1140)
SUBMITTER:
Wei-Jun Qian
PROVIDER: MSV000099883 | MassIVE | Wed Nov 12 19:44:00 GMT 2025
SECONDARY ACCESSION(S): PXD070670
REPOSITORIES: MassIVE
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