Metabolomics

Dataset Information

0

Serine synthesis pathway enzyme PHGDH is critical for muscle cell biomass, anabolic metabolism and mTORC1 signaling


ABSTRACT:

Cells use glycolytic intermediates for anabolism e.g., via the serine synthesis and pentose phosphate pathways. However, we still understand poorly how these metabolic pathways contribute to skeletal muscle cell biomass generation. The first aim of this study was therefore to identify enzymes that limit protein synthesis, myotube size and proliferation in skeletal muscle cells. We inhibited key enzymes of glycolysis, the pentose phosphate pathway and serine synthesis pathway to evaluate their importance in C2C12 myotube protein synthesis. Based on the results of this first screen, we then focused on the serine synthesis pathway enzyme phosphoglycerate dehydrogenase (PHGDH). We used two different PHGDH inhibitors and mouse C2C12 and human primary muscle cells to study the importance and function of the PHGDH. Both myoblasts and myotubes incorporated glucose-derived carbon into proteins, RNA and lipids and we showed that PHGDH is essential in these processes. PHGDH inhibition decreased protein synthesis, myotube size and myoblast proliferation without cytotoxic effects. The decreased protein synthesis in response to PHGDH inhibition appears to occur mainly mTORC1 dependently as was evident from experiments with insulin-like growth factor 1 and rapamycin. Further metabolomics analyses revealed that PHGDH inhibition accelerated glycolysis and altered amino acid, nucleotide and lipid metabolism. Lastly, we found that supplementing an antioxidant and redox modulator N-acetylcysteine partially rescued the decreased protein synthesis and mTORC1 signaling during PHGDH inhibition. The data suggest that PHGDH activity is critical for skeletal muscle cell biomass generation from glucose, and that it regulates protein synthesis and mTORC1 signaling.

INSTRUMENT(S): Nuclear Magnetic Resonance (NMR) -, Liquid Chromatography MS - positive - hilic, Liquid Chromatography MS - negative - hilic

PROVIDER: MTBLS8854 | MetaboLights | 2025-03-21

REPOSITORIES: MetaboLights

Dataset's files

Source:
Action DRS
NCT503_ex10.cnx Other
NCT503_ex11.cnx Other
NCT503_ex12.cnx Other
NCT503_ex13.cnx Other
NCT503_ex14.cnx Other
Items per page:
1 - 5 of 1486
altmetric image

Publications

Serine synthesis pathway enzyme PHGDH is critical for muscle cell biomass, anabolic metabolism, and mTORC1 signaling.

Mäntyselkä Sakari S   Kolari Kalle K   Baumert Philipp P   Ylä-Outinen Laura L   Kuikka Lauri L   Lahtonen Suvi S   Permi Perttu P   Wackerhage Henning H   Kalenius Elina E   Kivelä Riikka R   Hulmi Juha J JJ  

American journal of physiology. Endocrinology and metabolism 20231122 1


Cells use glycolytic intermediates for anabolism, e.g., via the serine synthesis and pentose phosphate pathways. However, we still understand poorly how these metabolic pathways contribute to skeletal muscle cell biomass generation. The first aim of this study was therefore to identify enzymes that limit protein synthesis, myotube size, and proliferation in skeletal muscle cells. We inhibited key enzymes of glycolysis, the pentose phosphate pathway, and the serine synthesis pathway to evaluate t  ...[more]

Similar Datasets

2019-10-14 | PXD013294 | Pride
2021-06-11 | GSE176530 | GEO
2019-07-31 | GSE84312 | GEO
2015-11-23 | E-GEOD-44818 | biostudies-arrayexpress
2022-10-28 | PXD034117 | Pride
2016-12-31 | GSE74842 | GEO
2021-10-15 | GSE185934 | GEO
2025-06-25 | PXD057409 | Pride
2025-06-13 | PXD057502 | Pride
2025-06-13 | PXD057554 | Pride