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Comparative gene expression on a co-culture of anaerobic ammonium and sulfur-oxidizing bacteria

ABSTRACT: Comparative gene expression on a co-culture of anaerobic ammonium and sulfur-oxidizing bacteria under ammonium and nitrate limitation

PROVIDER: PRJEB31138 | ENA |

REPOSITORIES: ENA

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uncultured anaerobic ammonium-oxidizing bacterium

Project description:uncultured anaerobic ammonium-oxidizing bacterium overview

| PRJNA359227 | ENA

uncultured anaerobic ammonium-oxidizing bacterium

Project description:uncultured anaerobic ammonium-oxidizing bacterium Raw sequence reads

| PRJNA321081 | ENA

Aerobic and anaerobic ammonium- and methane oxidizing coculture

Project description:Simulteneous activity of anaerobic and aerobic ammonium- and methane oxidizing microorganisms under oxygen limitation.

| PRJEB39466 | ENA

Evaluation of Edaphic Microbial Ammonium Oxidizing Communities during a Yellow Potato Cycle Culture

Project description:This study evaluated the ammonium oxidizing communities (COA) associated with a potato crop (Solanum phureja) rhizosphere soil in the savannah of Bogotá (Colombia) by examining the presence and abundance of amoA enzyme genes and transcripts by qPCR and next-generation sequence analysis. amoA gene abundance could not be quantified by qPCR due to problems inherent in the primers; however, the melting curve analysis detected increased fluorescence for Bacterial communities but not for Archaeal communities. Transcriptome analysis by next-generation sequencing revealed that the majority of reads mapped to ammonium-oxidizing Archaea, suggesting that this activity is primarily governed by the microbial group of the Crenarchaeota phylum. In contrast,a lower number of reads mapped to ammonia-oxidizing bacteria.

2018-08-06 | GSE71824 | GEO

Sulfur-oxidizing prototype biomass.

Project description:Sulfur-oxidizing biomass from a biotrickling filter.

| PRJEB12876 | ENA

Global gene expression of Ruegeria pomeroyi strain DSS3 in response to glucose, ammonium, phosphate, or sulfate limitation

Project description:We used the previously designed oligonucleotide-based microarray (Burgmann et al. Environmental Microbiology 2007, 9: 2742-2755) to detect the transcripts of R. pomeroyi DSS-3 genes when the cells were cultured under steady-state carbon (glucose), nitrogen (ammonium), phosphorus (phosphate), or sulfur (sulfate) limitation. A total of 14 mRNA samples were hybridized to the arrays (three biological replicates from glucose, ammonium, phosphate, or sulfate limitation and one technical replicate each for ammonium or sulfate limitation)

2011-09-30 | E-GEOD-27032 | biostudies-arrayexpress

Global gene expression of Ruegeria pomeroyi strain DSS3 in response to glucose, ammonium, phosphate, or sulfate limitation

2011-10-01 | GSE27032 | GEO

Nitric oxide-dependent anaerobic ammonium oxidation

Project description:Nitric oxide (NO) has several important functions in biology and atmospheric chemistry as a toxin, signaling molecule, ozone depleting agent and the precursor of the greenhouse gas nitrous oxide (N2O). Even though NO is a potent oxidant, and was available on earth earlier than oxygen, its direct use by microorganisms for growth was not demonstrated before. Using physiological experiments, metatranscriptomics and metaproteomics, here we show that anaerobic ammonium-oxidizing (anammox) bacterium Kuenenia stuttgartiensis grow by coupling ammonium oxidation to NO reduction, and produce only N2. Such a metabolism could have existed on early earth, and has implications in controlling N2O and NO emissions both from natural and manmade ecosystems, where anammox bacteria contribute significantly to N2 release to the atmosphere.

2019-02-26 | PXD011763 | Pride

Transcriptome response to different nitrogen sources and aerobic/anaerobic conditions in Hydrogenobacter thermophilus

Project description:Transcriptome profile of the Hydrogenobacter thermophilus TK-6 cells aerobically or anaerobically grown on ammonium, nitrate, or mix of ammonium and nitrate was determined by NimbleGen Eukaryotic Expression array (4x72K).

2017-07-23 | GSE70944 | GEO

Metagenome or environmental sample from alternating micro-aerobic/anaerobic ammonium oxidizing microbiome

Project description:Raw sequence reads from alternating micro-aerobic/anaerobic ammonium oxidizing microbiome

| PRJNA559529 | ENA