Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pocillopora meandrina, genomic and transcriptomic data

ABSTRACT: Pocillopora meandrina, genomic and transcriptomic data

PROVIDER: PRJEB51538 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Pocillopora meandrina and Pocillopora eydouxi

Project description:Pocillopora meandrina and Pocillopora eydouxi in nutrient-enriched and control treatments RNASeq and WGBS reads

| PRJNA744403 | ENA

Pocillopora, Stylophora, Seriatopora

Project description:Pocillopora damicornis, Pocillopora acuta, Pocillopora verrucosa, Pocillopora eydouxi, Pocillopora meandrina, Pocillopora ligulata, Pocillopora sp. B, Stylophora pistillata, Seriatopora hystrix Raw ezRAD sequence reads for species delineation

| PRJNA386062 | ENA

Porites lobata, genomic and transcriptomic data

Project description:Porites lobata, genomic and transcriptomic data

| PRJEB51771 | ENA

Porites evermanni, genomic and transcriptomic data

Project description:Porites evermanni, genomic and transcriptomic data

| PRJEB51842 | ENA

Tropheryma whipplei proteome - Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme

Project description:Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme. Testing systematic exchanges of nucleotides over long stretches produces inversed RNA pieces (here named “swinger” RNA) differing from their template DNA. These may explain some trashed data. Here analyses of genomic, transcriptomic and proteomic data of the pathogenic Tropheryma whipplei according to canonical genomic, transcriptomic and translational 'rules' resulted in trashing 58.9% of DNA, 37.7% RNA and about 85% of mass spectra (corresponding to peptides). In the trash, we found numerous DNA/RNA fragments compatible with “swinger” polymerization. Genomic sequences covered by «swinger» DNA and RNA are 3X more frequent than expected by chance and explained 12.4 and 20.8% of the rejected DNA and RNA sequences, respectively. As for peptides, several match with “swinger” RNAs, including some chimera, translated from both regular, and «swinger» transcripts, notably for ribosomal RNAs. Congruence of DNA, RNA and peptides resulting from the same swinging process suggest that systematic nucleotide exchanges increase coding potential, and may add to evolutionary diversification of bacterial populations.

2017-12-18 | PXD006238 | Pride

PDAC prognosis biomarker in genomic and transcriptomic molecular data

Project description:PDAC prognosis biomarker in genomic and transcriptomic molecular data

| PRJNA701087 | ENA

PDAC prognosis biomarker in genomic and transcriptomic molecular data

Project description:PDAC prognosis biomarker in genomic and transcriptomic molecular data

| PRJNA701088 | ENA

Pocillopora verrucosa

Project description:Pocillopora verrucosa overview

| PRJNA636565 | ENA

Pocillopora damicornis

Project description:Pocillopora damicornis overview