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Glycine max

ABSTRACT: Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence

OTHER RELATED OMICS DATASETS IN: E-GEOD-61857

PROVIDER: PRJNA262564 | ENA |

REPOSITORIES: ENA

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Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence

2015-05-01 | GSE61857 | GEO

Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence

Project description:We use RNA sequencing technology in a time course study to measure transcript abundance from three developmental stages in cotyledons and five stages in the trifoliate leaf of Glycine max to identify genes with distinct temporal patterns of expression during leaf or cotyledon development. We also examine the differences between these two photosynthetic tissues. Time course Expression analysis of Cotyledon Development and Leaf Development using RNAseq on distinct time points. 3 stages of the cotyledon were sequenced with 3 biological replicates in each stage. Five stages of the leaf, determined by physical appearance and plant developmental stage, were collected from the time of soil emergence to the onset of senescence and were sequenced with 3 biological replicates for each stage.

2015-05-01 | E-GEOD-61857 | biostudies-arrayexpress

E-GEOD-61857

Project description:Gene Expression Profiling of Glycine max Cotyledons and Trifoliate Leaves to Determine Genes Associated with Senescence

2019-05-15 | E-GEOD-61857 | ExpressionAtlas

Epigenomics of Glycine max

Project description:Cytosine methylation is a base modification that is often used by genomes to store information that is stably inherited through mitotic cell divisions. Most cytosine DNA methylation is stable throughout different cell types or by exposure to different environmental conditions in plant genomes. Here, we profile the epigenomes of ~100 Glycine max lines to explore the extent of natural epigenomic variation. We also use these data to determine the extent to which DNA methylation variants are linked to genetic variations.

2018-05-07 | GSE114074 | GEO

Glycine max strain:93B15 Transcriptome or Gene expression

Project description:The seed coat is a vital tissue for directing nutrient supply to the embryo and cotyledons during development. By forming a sucrose gradient, the seed coat promotes transport of sugars from source leaves to seeds, thereby increasing sink strength. Understanding how gene regulation in sink tissue is altered by climate change factors will help elucidate the role these genes play in determining yield. This project aims to determine how elevated temperature, drought and ozone alter gene expression in the seed coat. Overall this study discovered high abundance seed coat specific genes, which may be candidates for functional genomic analysis in the future.

2014-03-04 | E-MTAB-5076 | biostudies-arrayexpress

Pathogenic response of Glycine max to the stem parasitic plant Cuscuta

Project description:Little is known about plant pathogenic response to parasitic plants, although some parasitic plants affect crop production in certain areas. To study this, we chose Glycine max as the model host plant and investigated changes in expression patterns after parasitization by Cuscuta using microarrays. Transcriptional change of Glycine max stem with and without Cuscuta at 2 different stages were compared

2014-06-27 | E-GEOD-51328 | biostudies-arrayexpress

Identifying conserved and novel miRNAs in germinating seeds of Glycine max using deep sequencing

Project description:MicroRNAs (miRNAs) are important post-transcriptional regulators of plant development. In soybean (Glycine max), an important edible oil crop, valuable lipids are synthesized and stored in the cotyledons during embryogenesis .This storage lipids are used as energy source of the emerging seeds, during the germination procces. Until now, there are no microRNAs related to lipid metabolism in soybean or any other plant. This work aims to describe the miRNAome of germinating seeds of B. napus by identifying plant-conserved and novel miRNAs and comparing miRNA abundance in mature versus germinating seeds. A total of 183 familes were detected through a computational analysis of a large number of reads obtained from deep sequencing from two small RNA libraries of (i) pooled germintaing seeds stages and (ii) mature soybean seeds. We have found 39 new mirna precursors which produce 41 new mature forms. The present work also have identified isomiRNAs and mirnas offset (moRNAs). This work presents a comprehensive study of the miRNA transcriptome of soybean germinating seeds and will provide a basis for future research on more targeted studies of individual miRNAs and their functions in lipid consumption in development soybean seeds. MicroRNA profiles in 2 different seed libraries (mature seeds and a pool of germinating seed stages) of Glycine max by deep sequencing (Illumina GAII).

2015-05-25 | E-GEOD-38373 | biostudies-arrayexpress

Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq

Project description:Transformation of Glycine max with seed-targeted expression vectors via Agrobacterium causes measurable unscripted gene expression changes in the seed transcriptome

2015-10-04 | GSE64620 | GEO

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Project description:Transcript profiling of control vs Mungbean yellow mosaic India virus infected Glycine max variety JS335. RNA samples were collected at 2 dpi to study change in transcript profile at early infection.

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Transcriptional Analysis of 1M Regions in Glycine max Using Tiling Microarrays

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