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TNFα and LTβ stimulated UM-SCC 46 gene expression [LTB]

ABSTRACT: TNFα and LTβ stimulated UM-SCC 46 gene expression [LTB]

PROVIDER: PRJNA523625 | ENA |

REPOSITORIES: ENA

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TNFα and LTβ stimulated UM-SCC 46 gene expression [TNF]

Project description:To investigate the regulatory mechanisms and targets of the activation of NF-kB and inflammatory pathways, we treated HPV(-) head and neck cancer line UM-SCC 46 cells with TNFα and LTβ at different time points, and compared the gene expression by microarray. TNFα uniquely induced 172 genes, LTβ specifically induced 202 genes, while 155 genes were induced by both ligands. Total RNA samples were isolated from UM-SCC 46 cells after TNFα or LTβ treatment at different time points, and the gene expression were compared with untreated cell controls.

2019-02-22 | GSE126904 | GEO

TNFα and LTβ stimulated UM-SCC 46 gene expression [LTB]

Project description:To investigate the regulatory mechanisms and targets of the activation of NF-kappaB and inflammatory pathways, we treated HPV(-) head and neck cancer line UM-SCC 46 cells with TNFα and LTβ at different time points, and compared the gene expression by microarray. TNFα uniquely induced 172 genes, LTβ specifically induced 202 genes, while 155 genes were induced by both ligands. Total RNA samples were isolated from UM-SCC 46 cells after TNFα or LTβ treatment at different time points, and the gene expression were compared with untreated cell controls.

2019-02-22 | GSE126903 | GEO

TNFα and LTβ stimulated UM-SCC 46 gene expression [TNF]

Project description:TNFα and LTβ stimulated UM-SCC 46 gene expression [TNF]

| PRJNA523626 | ENA

TNFa and LTB stimulated UM-SCC 46 gene expression

Project description:TNFa and LTB stimulated UM-SCC 46 gene expression

| PRJNA523623 | ENA

Genome-wide analysis of histone modification in UPCI-SCC-090, UM-SCC-104, FaDu and NP69SV40T.

Project description:We analysed active enhancers in UPCI-SCC-090, UM-SCC-104, FaDu and NP69SV40T by performing ChIP-seq on H3K4me3, H3K4me1 and H3K27ac.

2023-01-06 | GSE211473 | GEO

Effect of MIR-375 expression on UM-SCC-1

Project description:MicroRNA mir-375 was expressed in head and neck cancer UM-SCC-1 tumor cells and expression was compared to empty vector control.

2017-03-15 | E-MTAB-5405 | biostudies-arrayexpress

TNFa and LTB stimulated UM-SCC 46 gene expression

Project description:This SuperSeries is composed of the SubSeries listed below.

2019-02-22 | GSE126905 | GEO

Transcriptome analysis of IEC4.1 cells in response to TNFα stimulation.

Project description:Mouse intestinal epithelial cells (IEC4.1 cells) were stimulated with TNFα (10 ng/ml) for 4h. The Agilent SurePrint G3 Mouse Gene Expression Microarray (G4852A) was used for the analysis, which provides full coverage of genes and transcripts with the most up-to-date content, including mRNAs and lincRNAs (http://www.chem.agilent.com/store/en_US/Prod-G4852A/G4852A). IEC4.1 cells were grown to 80% confluence for four groups: the siRNA control (Group A, cells treated with a non-specific scrambied siRNA control), the TNFα -stimulated (Group B, cells treated with the siRNA control plus TNFα stimulation), lincRNA-Cox2 siRNA (Group C, cells treated with an siRNA to lincRNA-Cox2), and lincRNA-Cox2 siRNA/ TNFα stimulated (Group D, cells treated with the lincNRA-Cox2 siRNA plus TNFα stimulation). Cells were treated with the siRNAs for 24h, followed by additional culture for 4h in the presence or absence of TNFα (10 ng/ml). Total RNAs were prepared with the RNeasy Mini kit (Qiagen) according to the manufacturer’s instruction (Ambion).

2016-10-25 | E-MTAB-3904 | biostudies-arrayexpress

Hi-C of head and neck cell lines

Project description:We comprehensively analysed chromatin interactions in UPCI-SCC-090, UM-SCC-47, UM-SCC-104, FaDu and NP69SV40T by performing Hi-C.

2023-01-06 | GSE211296 | GEO

Project description:metabolite levels provided by UM platform (Creative Dynamics Inc, NY, USA) (the data is raw abundance. Mapping was applied on log10 transformed data)

| EGAD00010002146 | EGA

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