Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ACGH Detects Copy Number Variation with Similar Resolution to PacBio Sequencing Approaches

ABSTRACT: aCGH Detects Copy Number Variation with Similar Resolution to PacBio Sequencing Approaches

PROVIDER: PRJNA595492 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

aCGH Detects Copy Number Variation with Similar Resolution to PacBio Sequencing Approaches

Project description:This study examines genomic copy-number variation between two African cichlid species through array comparative genomic hybridization. Probe level hybridization ratios were compared to copy number variation identified in Illumina and Pacific Biosciences genome assemblies from both species. Array comparative genomic hybridization was performed with 3 samples (1 replicate array setup) of genomic DNA from Maylandia zebra vs. Orechromis niloticus XX clone genomic DNA from University of Stirling clonal lines.

2019-12-14 | GSE141976 | GEO

Identification of copy number variation using aCGH in Chinese chicken breeds

Project description:CNV plays an important role in the chicken genomic studies,it is imperative need to investigate the extent and pattern of CNVs using array comparative genomic hybridization (aCGH) in chinese chicken breeds for future studies associating phenotype to genome architecture. we describe systematic and genome-wide analysis of CNVs loci in five Chinese indigenous chicken breeds were evaluated by aCGH.

2014-10-10 | GSE49889 | GEO

Gene copy number variation in male breast cancer by aCGH.

Project description: Not available

| S-EPMC4605520 | biostudies-literature

Identification of copy number variation using aCGH in Chinese chicken breeds

2014-10-10 | E-GEOD-49889 | biostudies-arrayexpress

Preanalytical Impacts on Copy Number Variation Detection by aCGH Technology

Project description:Preanalytical Impacts on Copy Number Variation Detection by aCGH Technology

| PRJNA477670 | ENA

Flexible and accurate detection of genomic copy-number changes from aCGH.

Project description: Not available

| S-EPMC1894821 | biostudies-literature

High-resolution aCGH analyses of copy number alterations in HER2-amplified breast cancer

Project description:HER2 gene amplification and protein overexpression (HER2+) define a clinically challenging subgroup of breast cancer with variable prognosis and response to therapy. Although gene expression profiling has identified an ERBB2 molecular subtype of breast cancer, it is clear that HER2+ tumors reside in all molecular subtypes and represent a genomically and biologically heterogeneous group. Genome-wide DNA copy number profiling, using BAC array comparative genomic hybridization (aCGH) were performed on 200 tumors with mixed clinical characteristics and amplification of HER2. Genomic Identification of Significant Targets in Cancer (GISTIC) was used to identify significant copy number aberrations (CNAs) in HER2+ tumors. This analysis sheds further light on the genomically complex and heterogeneous nature of HER2+ tumors in relation to other subgroups of breast cancer.

2010-04-14 | GSE21259 | GEO

High-resolution aCGH analyses of copy number alterations in HER2-amplified breast cancer

2010-04-14 | E-GEOD-21259 | biostudies-arrayexpress

Analysis of somatic copy number alterations in ApcΔ716 mouse intestinal tumors [aCGH]

Project description:Analysis of somatic copy number alterations in ApcΔ716 mouse intestinal tumors [aCGH]

| PRJNA421350 | ENA