Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sandaracinus amylolyticus strain:MSr10575 | isolate:wild type

ABSTRACT: Sandaracinus amylolyticus strain:MSr10575 | isolate:wild type Genome sequencing

PROVIDER: PRJNA681818 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Lactobacillus amylolyticus isolate:Lactobacillus amylolyticus L5

Project description:Lactobacillus amylolyticus isolate:Lactobacillus amylolyticus L5 Genome sequencing

| PRJNA486879 | ENA

Xanthomonas oryzae pv. oryzae (Indian Isolate): Wild type vs. rpfF mutant

Project description:Transcription profiling of the DSF regulon in Xanthomonas oryzae pv. oryzae (Xoo) using wild type and the rpfF mutant. Cell-cell signaling mediated by the quorum sensing molecule known as Diffusible Signaling factor (DSF) is required for virulence of Xanthomonas group of plant pathogens. DSF in different Xanthomonas and the closely related plant pathogen Xylella fastidiosa regulates diverse traits in a strain specific manner. The transcriptional profiling performed in this study is to elucidate the traits regulated by DSF from the Indian isolate of Xanthomonas oryzae pv. oryzae, which exhibits traits very different from other Xanthomonas group of plant pathogen. In this study, transcription analysis was done between a wild type Xanthomonas oryzae pv. oryzae strain and an isogenic strain that has a mutation in the DSF biosynthetic gene rpfF.

2011-04-02 | GSE27809 | GEO

E. Coli Nissle wild type versus knockout strain

Project description:E. Coli Nissle wild type versus knockout strain grown in M-9 media.

2019-01-31 | MSV000083387 | MassIVE

GNPS - E. Coli Nissle wild type versus knockout strain

Project description:E. Coli Nissle wild type versus knockout strain grown in M-9 media.

2019-01-31 | MSV000083387 | GNPS

Comparison of gene expression in ΔrpaA strain and wild-type strain

Project description:The goal of the experiment was to determine the difference in gene expression between the wild-type strain and a strain lacking rpaA (ΔrpaA). Because gene expression is not at steady-state in the wild-type -- it oscillates with a circadian period -- and we did not know a priori whether it is at steady-state in the ΔrpaA strain, we compared the time-averaged gene expression in the wild-type to the time-averaged gene expression in the ΔrpaA strain.

2013-12-04 | GSE50919 | GEO

Sargassum thunbergii strain:wild-type | isolate:dioecism | breed:sexual multiplication | cultivar:wild-type

Project description:Sargassum thunbergii strain:wild-type | isolate:dioecism | breed:sexual multiplication | cultivar:wild-type Raw sequence reads

| PRJNA656417 | ENA

Transcriptome of the NWMN_0641 deletion mutant strain and the wild-type Staphylococcus aureus Newman strain

Project description:To study the roles of NWMN_0641, we used microarray to compare the transcriptome of the NWMN_0641 deletion strain with that of the wild-type Staphylococcus aureus Newman strain. Transcriptome of the NWMN_0641 deletion mutant strain and the wild-type Newman strain

2014-11-04 | GSE57260 | GEO

Transcriptome sequencing of bristol strain (wild-type), metl-9 KO strain and metl-9 mutation strain upon P.aeruginosa infection

Project description:We challenge bristol strain (wild-type), metl-9 KO strain (short as KO, has a 101bp insertion, leads to a truncated protein of 258aa) and metl-9 catalytic-activity mutated strain (short as mut, has N172K, D274G mutations in full-length protein) with P.aeruginosa (P.A14), and observe a discrepant transcriptome pattern between wild-type and KO/mut strains. Plenty of innate immune response genes show different expression patterns upon P.A14 infection between the wild-type strain and KO/mut strain. It indicates the important role of metl-9 and 6mA in worm innate immune response modulation.

2022-01-05 | GSE192901 | GEO

Transcription profiling of the wild-type strain, mhy1Δ mutant and MHY1-overexpressing mutant strain.

Project description:To explore the cellular functions of Mhy1, how Mhy1 promotes filamentation, we wanted to identify genes that are transcriptionally controlled by Mhy1. To this end, RNA-Seq analysis was conducted in cells of wild-type strain, mhy1Δ mutant and wild-type strain overexpressing MHY1 grown in filament-inducing YNDC7 medium.

2020-09-30 | GSE133657 | GEO

Xanthomonas oryzae pv. oryzae (Indian Isolate): Wild type vs. rpfF mutant

2011-04-02 | E-GEOD-27809 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data