Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Human Feces

ABSTRACT: Metagenome-assembled genomes for new prokaryotic species from Indian and Japanese gut metagenomes.

PROVIDER: PRJNA730993 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	DXKD01.dat.gz	Other
	DXKD01.fasta.gz	Fasta.gz
	DXKD01.master.dat	Other
	DXKE01.dat.gz	Other

Items per page:

1 - 5 of 1474

Similar Datasets

Project description:Metagenome-assembled genomes for new prokaryotic species from Korean gut metagenomes.

| PRJNA678426 | ENA

Global Human Gut MAG (HGM) Dataset

Project description:Prokaryotic genomes for 2058 new species assembled from globally distributed human gut metagenomes

| PRJEB31003 | ENA

Gene expression dynamics during regeneration of Eisenia fetida

Project description:Earthworms show a wide spectrum of regenerative potential with certain species like Eisenia fetida, a terrestrial redworm, capable of regenerating more than two-thirds of their body while other closely related species, such as Paranais litoralis seem to have lost this ability. Earthworms belong to the phylum annelida, in which the genomes of the marine oligochaete Capitella telata, and the freshwater leech Helobdella robusta have been sequenced and studied. Herein, we report the de novo assembled transcriptome of Eisenia fetida (Indian isolate), along with an analysis of the transcriptomic changes during regeneration. We also used de novo assembled RNAseq data to identify genes that are differentially expressed during regeneration, both in the newly regenerating cells and in the adjacent tissue.

2018-07-03 | GSE101310 | GEO

human gut metagenome

Project description:Proposal of six new prokaryotic genomes from human gut microbiome

| PRJNA506016 | ENA

Metagenome-Assembled Genomes from Amazon river basin

Project description:Prokaryotic metagenome-assembled genomes retrieved from Amazon river basin water samples metagenomes sequenced in Illumina platform

| PRJEB25176 | ENA

feces metagenome

Project description:Meta-16S rDNA of Japanese macaques' gut microbiome

| PRJDB8636 | ENA

Frequency of change determines effectiveness of microbial response strategies in sulfidic stream microbiomes

Project description:Chemostat incubations were established and inoculated with sediments collected from Canyon Creek, Calgary, Alberta, Canada. The chemostats experienced oxic-anoxic change of different frequency, High-frequency, Medium-frequency and Low-frequency. 18 samples were collected at the end of the final oxic phase and the final anoxic phase in the triplicated chemostats for metagenomic and metaproteomic analysis. 26 genomes were assembled from metagenomes. Proteomes were used to investigate translational regulation of each population associated with a genome.

2023-04-26 | PXD028583 | Pride

soil/sediment metagenome

Project description:Amazonian soil and sediment metagenomes and metagenome-assembled genomes

| PRJNA782633 | ENA

Project description:Five New Genomes of Indian Photorhabdus Isolates

| PRJNA434554 | ENA

Gene Expression in Prokaryotic Microbial Assemblages Across Salinity Gradients in the Columbia River Coastal Margin

Project description:Analysis of microbial gene expression in response to physical and chemical gradients forming in the Columbia River, estuary, plume and coastal ocean was done in the context of the environmental data base. Gene expression was analyzed for 2,234 individual genes that were selected from fully sequenced genomes of 246 prokaryotic species (bacteria and archaea) as related to the nitrogen metabolism and carbon fixation. Seasonal molecular portraits of differential gene expression in prokaryotic communities during river-to-ocean transition were created using freshwater baseline samples (268, 270, 347, 002, 006, 207, 212).

2010-09-10 | GSE18303 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data