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RNA-seq and m6A-seq of Min6 cells were transfected with the GR cDNA expression vector or control vector

ABSTRACT: RNA-seq and m6A-seq of Min6 cells were transfected with the GR cDNA expression vector or control vector

PROVIDER: PRJNA755612 | ENA |

REPOSITORIES: ENA

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RNA-seq of Min6 cells were transfected with the GR cDNA expression vector or control vector

Project description:In order to investigated the underlying molecular mechanism of GR’s effects, we transfected the Min6 cell with the GR cDNA expression vector or control vector, and then extracted RNA of Min6 cells for RNA sequencing. We studied the gene-expression differences resulting in GR overexpress. A total of 21542 gene transcripts was captured,and 233 genes showed significant expression differences (p-value<0.05,|log2Foldchange|>1) between the two group. Further GO analysis and KEGG analysis found that GR overactivation instigates dysregulated autophagy in beta-cells

2021-08-19 | GSE182267 | GEO

m6A-seq of Min6 cells were transfected with the GR cDNA expression vector or control vector

Project description:To further explore the underlying molecular mechanism of GR’s effects, we transfected the Min6 cell with the GR cDNA expression vector or control vector, and then extracted RNA of Min6 cells. M6A antibody was used to specifically recognize m6A on mRNA. methylation modified RNA fragments were obtained by immunoprecipitation and used for high-throughput sequencing. By comparing the captured RNA fragments, we found that there were 22381 difference peaks between GR overexpression group and control group, among which 3659 binding peaks were significantly different.Further analysis the MeRIP sequencing results of MIN6 cells overexpressing GR revealed that decreased m6A was detected in a large number of autophagy-related mRNAs.

2021-08-19 | GSE182268 | GEO

m6A-seq of Min6 cells were transfected with the GR cDNA expression vector or control vector

Project description:m6A-seq of Min6 cells were transfected with the GR cDNA expression vector or control vector

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RNA-seq of Min6 cells were transfected with the GR cDNA expression vector or control vector

Project description:RNA-seq of Min6 cells were transfected with the GR cDNA expression vector or control vector

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RNA-seq and m6A-seq of Min6 cells were transfected with the GR cDNA expression vector or control vector

Project description:This SuperSeries is composed of the SubSeries listed below.

2021-08-19 | GSE182269 | GEO

Human Breast Cells: Control vs. TRIM29 cDNA- or TRIM29 shRNA-transfected

Project description:Transcriptional profiling of human normal-like breast cells MCF10A comparing control MCF10A cells transfected with a pLenti6/BLOCK-iT™-DEST vector with MCF10A cells transfected with a pLenti6/BLOCK-iT™-DEST vector containing TRIM29 shRNA targeting nucleotides 1265–1285 of the TRIM29 open reading frame (ORF, NM_012101). Transcriptional profiling of human breast cancer cells MCF7 comparing control MCF7 cells transfected with a pLenti6.2/N-LumioTM/V5-DEST vector with MCF7 cells transfected with a pLenti6.2/N-LumioTM/V5-DEST vector containing TRIM29 full-length cDNA (ORF, NM_012101).

2010-12-23 | GSE26238 | GEO

G1E cells infected with control (HMD empty vector), human GATA1, or human GATA1 mutant cDNA

Project description:G1E cells infected with control (HMD empty vector), human GATA1, or human GATA1 mutant cDNA

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MIN6 beta cell CtBP2 ChIP-seq

Project description:CtBP2 ChIP-seq analysis was performed in a murine pancreatic beta cell line MIN6.

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Next Generation Sequencing Analysis of Gene expression of Min6 insulinoma cell line transfected with siNC, siSRSF1 or siSRSF2

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Identification of a novel Glis3-348aa protein in MIN6 cells by LC-MS

Project description:To identify the novel protein encoded by circGlis3, total protein lysates were extracted from MIN6 cells transfected with circGlis3 plasmid or empty vector and separated by SDS-PAGE, followed by Coomassie brilliant blue staining. The differential gel bands near 35 kDa were excised and subjected to mass spectrometry.

2023-11-02 | PXD037447 | Pride

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