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M6A-seq of Min6 cells were transfected with the GR cDNA expression vector or control vector

ABSTRACT: m6A-seq of Min6 cells were transfected with the GR cDNA expression vector or control vector

PROVIDER: PRJNA755630 | ENA |

REPOSITORIES: ENA

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RNA-seq of Min6 cells were transfected with the GR cDNA expression vector or control vector

Project description:In order to investigated the underlying molecular mechanism of GR’s effects, we transfected the Min6 cell with the GR cDNA expression vector or control vector, and then extracted RNA of Min6 cells for RNA sequencing. We studied the gene-expression differences resulting in GR overexpress. A total of 21542 gene transcripts was captured,and 233 genes showed significant expression differences (p-value<0.05,|log2Foldchange|>1) between the two group. Further GO analysis and KEGG analysis found that GR overactivation instigates dysregulated autophagy in beta-cells

2021-08-19 | GSE182267 | GEO

m6A-seq of Min6 cells were transfected with the GR cDNA expression vector or control vector

Project description:To further explore the underlying molecular mechanism of GR’s effects, we transfected the Min6 cell with the GR cDNA expression vector or control vector, and then extracted RNA of Min6 cells. M6A antibody was used to specifically recognize m6A on mRNA. methylation modified RNA fragments were obtained by immunoprecipitation and used for high-throughput sequencing. By comparing the captured RNA fragments, we found that there were 22381 difference peaks between GR overexpression group and control group, among which 3659 binding peaks were significantly different.Further analysis the MeRIP sequencing results of MIN6 cells overexpressing GR revealed that decreased m6A was detected in a large number of autophagy-related mRNAs.

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RNA-seq of Min6 cells were transfected with the GR cDNA expression vector or control vector

Project description:RNA-seq of Min6 cells were transfected with the GR cDNA expression vector or control vector

| PRJNA755631 | ENA

RNA-seq and m6A-seq of Min6 cells were transfected with the GR cDNA expression vector or control vector

Project description:RNA-seq and m6A-seq of Min6 cells were transfected with the GR cDNA expression vector or control vector

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Human Breast Cells: Control vs. TRIM29 cDNA- or TRIM29 shRNA-transfected

Project description:Transcriptional profiling of human normal-like breast cells MCF10A comparing control MCF10A cells transfected with a pLenti6/BLOCK-iT™-DEST vector with MCF10A cells transfected with a pLenti6/BLOCK-iT™-DEST vector containing TRIM29 shRNA targeting nucleotides 1265–1285 of the TRIM29 open reading frame (ORF, NM_012101). Transcriptional profiling of human breast cancer cells MCF7 comparing control MCF7 cells transfected with a pLenti6.2/N-LumioTM/V5-DEST vector with MCF7 cells transfected with a pLenti6.2/N-LumioTM/V5-DEST vector containing TRIM29 full-length cDNA (ORF, NM_012101).

2010-12-23 | GSE26238 | GEO

Identification of a novel Glis3-348aa protein in MIN6 cells by LC-MS

Project description:To identify the novel protein encoded by circGlis3, total protein lysates were extracted from MIN6 cells transfected with circGlis3 plasmid or empty vector and separated by SDS-PAGE, followed by Coomassie brilliant blue staining. The differential gel bands near 35 kDa were excised and subjected to mass spectrometry.

2023-11-02 | PXD037447 | Pride

RNA-seq and m6A-seq of Min6 cells were transfected with the GR cDNA expression vector or control vector

Project description:This SuperSeries is composed of the SubSeries listed below.

2021-08-19 | GSE182269 | GEO

MKN28 Cells: Vector vs ZIC1 Transfected

Project description:MKN28 cell lines were transfected with pCDNA3.1-ZIC1 or pCDNA3.1 empty vector. Then, an Agilent oligonucleotide microarray was conducted to systematically determine downstream targets of ZIC1.

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Transcription profiling by array of mouse pancreatic beta cells of MIN6 insulinoma cell line transfected with siRNA directed against murine Meis3 or non targeting control.

Project description:In order to identify genes that are regulated by Meis3, MIN6 insulinoma cells were transfected with siRNA directed against murine Meis3 (siMeis3) or non targeting control (siControl). RNA was harvested and reverse transcribed. Reduced expression of Meis3 was confirmed. The RNA was then submitted for labeling and hybridization to the Agilent cDNA microarray.

2010-11-01 | E-MTAB-273 | biostudies-arrayexpress

Pla2g6-dependent cytokine signaling in MIN6 cells

Project description:Analysis of MIN6 murine beta cell line transfected with Pla2g6 RNAi and treated with pro-inflammatory cytokines TNF-alpha, IL-1beta and IFN-gamma.

2024-02-08 | PXD017863 | Pride

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