Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mouse whole-body scaffold with embedded organs

ABSTRACT: In this workspace, we have the workflow and configuration files needed to produce the mouse whole-body scaffold with embedded organs for the SPARC project.

SUBMITTER: David Nickerson

PROVIDER: 6e1 | Physiome Model Repository |

REPOSITORIES: PMR

ACCESS DATA

Json Xml

Publications

Sorry, this publication's infomation has not been loaded in the Indexer, please go directly to PUBMED or Altmetric.

Similar Datasets

Human whole-body scaffold with embedded organs

Project description:In this workspace, we have the workflow and configuration files needed to produce the human whole-body scaffold with nerves centrelines and embedded organs for the SPARC project.

| 6ab | Physiome Model Repository

Human whole-body with embedded organs using automatic workflow for inserting the organs

Project description:In this workspace, we have the automatic workflow and configuration files for inserting organs needed to produce the human whole-body scaffold with embedded organs for the SPARC project.

| 7d7 | Physiome Model Repository

Pig whole-body with embedded organs using automatic workflow for inserting the organs

Project description:In this workspace, we have the automatic workflow and configuration files for inserting organs needed to produce the pig whole-body scaffold with embedded organs for the SPARC project.

| 82f | Physiome Model Repository

Rat whole-body with embedded organs using automatic workflow for inserting the organs

Project description:In this workspace, we have the automatic workflow and configuration files for inserting organs needed to produce the rat whole-body scaffold with embedded organs for the SPARC project.

| 7da | Physiome Model Repository

Rat whole-body scaffold with embedded organs

Project description:In this workspace we have the files needed to produce the rat whole-body scaffold with SPARC priority embedded organs for the SPARC project.

| 655 | Physiome Model Repository

Transcription profiling of zebrafish ovary, testis, brain, kidney and whole body to identify gonad-expressed genes and their expression in various organs

Project description:Our knowledge about the molecular regulation of zebrafish gonad development and function is very limited. This study aims to identify gonad-expressed genes in zebrafish and to analyze their expression in various organs. Using our custom ÂGonad Uniclone Microarray v1, we performed a total of 32 hybridizations, using eight target organs with four biological replicates each. The target organs consisted of adult ovary and testis; the brain, kidney and rest-of-body (ie. whole body except the three organs listed earlier) from both male and female zebrafish, were used as controls. For simplicity, rest of body will be regarded as an organ. All targets were hybridized against a pooled common reference consisting of equal amounts of targets from all dissected organs from a single adult male and a single adult female.

2007-12-31 | E-MEXP-1272 | biostudies-arrayexpress

A 3D human whole-body model with integrated organs, vasculature, musculoskeletal and nervous systems for mapping nerves

Project description:In this workspace, we have the workflow and configuration files needed to produce the 3D human whole-body scaffold with embedded organs and integrated musculoskeletal and vasculature systems for the SPARC project.

| add | Physiome Model Repository

Shotgun proteomics of chemosensory organs of Varroa destructor mite

Project description:Aims of the project is the identification of soluble chemosensory proteins in the olfactory organs of the honeybee mite Varroa destructor. Different families of soluble proteins acting as carriers for odorants have been identified in hexapods, while very limited information is available for other terrestrial Arthropoda. In mites and ticks olfactory organs are located on the distal part of the forelegs and on the capitulum appendages. These two body tagmata and the second pair of legs as control, have been dissected out of phoretics and reproductives Varroa destructor females and protein extracts have been analysed through shotgun proteomics. Protein identification and relative quantification (Label-free quantification, LFQ) has been performed using MaxQuant (version 1.5.8.3). Among the proteins more abundant in appendages bearing chemosensory organs, considering as a model hexapoda soluble olfactory proteins, we have searched for small secreted proteins whose structure include a hydrophobic binding pocket.

2018-04-12 | PXD008679 | Pride

Single Molecule RNA FISH (smFISH) in Whole-Mount Mouse Embryonic Organs.

Project description:Single molecule RNA fluorescence in situ hybridization (smFISH) has become the standard tool for high spatial resolution analysis of gene expression in the context of tissue organization. This article describes protocols to perform smFISH on whole-mount mouse embryonic organs, where tissue organization can be compared to RNA expression by co-immunostaining of known protein markers. An enzymatic labeling strategy is also introduced to produce low-cost smFISH probes. Important considerations and practical guidelines for imaging smFISH samples using fluorescence confocal microscopy are described. Finally, a suite of custom-written ImageJ macros is included with detailed instructions to enable semi-automated smFISH image analysis of both 2D and 3D images. © 2018 by John Wiley & Sons, Inc.

| S-EPMC6500779 | biostudies-literature

RBPs proteome in HEK293 cells, mESCs and mouse organs

Project description:Identification of RBPs proteome in HEK293 cells, mouse embryonic stem cells (mESCs) and adult mouse primary organs (brain, heart, lung, kidney, liver)

2024-08-26 | PXD037105 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data