HLA-B40-peptidome - Increased Diversity of the HLA-B40 Ligandome by the Presentation of Peptides Phosphorylated at Their Main Anchor Residue

ABSTRACT: HLA class I molecules bind peptides derived from the intracellular degradation of endogenous proteins and present them to cytotoxic T lymphocytes, allowing the immune system to detect transformed or virally infected cells. It is known that endogenous HLA class I associated peptides may harbor posttranslational modifications. In particular, phosphorylated ligands have raised much interest as potential targets for cancer immunotherapy. By combining affinity purification with high resolution mass spectrometry, we identified more than 2000 unique ligands associated to HLA-B40. Sequence analysis revealed two major anchor motifs: Aspartic or glutamic acid at peptide position 2 (P2) and methionine, phenylalanine or aliphatic residues at the C-terminus. The use of IMAC and TiO2 affinity chromatography allowed the characterization of 86 phosphorylated ligands. Every sequence belonging to this subset was further confirmed by comparing its experimental MS2 spectrum with that obtained upon fragmentation of the corresponding synthetic peptide. Remarkably, three of the identified phospholigands lacked a canonical anchor residue at P2 containing phosphoserine instead. Binding assays showed that this sort of peptides bound to HLA-B40 with high affinity probably due to the molecular mimicry between these residues. Altogether, our data demonstrate that the peptide repertoire of a given HLA allotype can be broadened by the presentation of peptides with posttranslational modifications at major anchor positions. We suggest that ligands with phosphorylated residues at P2 may be optimal targets for T-cell based cancer immunotherapy.

INSTRUMENT(S): instrument model, TripleTOF 5600

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): C1r Cell

DISEASE(S): Lymphoma

SUBMITTER: Miguel Marcilla  

PROVIDER: PXD000450 | Pride | 2014-02-03

REPOSITORIES: Pride