Proteomics

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Proteomics of JHS samples identifies proteins associated with heart failure


ABSTRACT: RELEVANCE: Identifying early plasma protein biomarkers that predict the development of heart failure (HF) following myocardial infarction (MI) will help to stratify at risk subjects and provide insight into more effective therapeutic strategies. OBJECTIVE/HYPOTHESIS: The goal of this study was to determine markers of HF in African Americans, using plasma samples collected before the development of symptoms. We propose that early plasma glycoprotein changes will link to later development of heart failure. ApolipoproteinF will be the strongest indicator. METHODS: Plasma samples from a subset of Jackson Heart Study participants with a history of MI but without prevalent heart failure (HF) at visit 2 (2005-2008) were analyzed by glycoproteomics. Individuals were grouped into those who experienced subsequent HF hospitalization after visit 2 (n=15; 3 men/ 12 women) and those without HF hospitalization through 2012 (n=45; 24 men/ 21 women). N-linked plasma glycopeptides were quantified by solid-phase extraction coupled to mass spectrometry and identified using RefSeq and SwissProt. Proteins were mapped for biological processes and functional pathways using Ingenuity Pathway Analysis (IPA) and linked to clinical characteristics.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Pomacea maculata   Klebsiella variicola   Priestia megaterium DSM 319   Nepenthes ventricosa x Nepenthes alata   Synechococcus cyanophage syn   Aspergillus terreus   Morganella   Oreochromis mossambicus   Skeletonema dohrnii   Thermoclostridium stercorarium   Burkholderia cenocepacia H111   Larimichthys crocea   Pisum sativum   marine plankton environmental sample   Taraxacum sp.   Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   Thermoanaerobacter pseudethanolicus   Carica papaya   Aspergillus niger CBS 513.88   Tropheryma whipplei TW08/27   Strigomonas culicis   Echinococcus granulosus   Lecanicillium fungicola var. fungicola   Spirometra erinaceieuropaei   Nymphicus hollandicus   Coxsackievirus B3   Volvariella volvacea V23   Brachionus plicatilis   Phikzvirus phiKZ   Klebsiella pneumoniae LCT-KP289   Paraconiothyrium   Lingulodinium   Passiflora edulis   Acyrthosiphon pisum   Ehrlichia ruminantium str. Gardel   Escherichia coli O157:NM   Natronomonas pharaonis DSM 2160   Streptococcus mutans 19   Acinetobacter baumannii AB5075   Dunaliella salina   Pseudomonas sp. Lz4W   Akkermansia muciniphila ATCC BAA-835   Chlorocebus aethiops aethiops   Daktulosphaira vitifoliae   Steinernema carpocapsae   Parhyale hawaiensis   Anisakis simplex complex   Staphylococcus cohnii   Synechocystis sp.   Phaeodactylum tricornutum CCAP 1055/1   Clostridium phage c-st   Nicotiana gossei   Meles meles   Acidithiobacillus ferrooxidans ATCC 53993   Geobacter sulfurreducens PCA   Pachysolen tannophilus NRRL Y-2460   Nephotettix cincticeps   Taeniopygia guttata   Thermothelomyces heterothallicus   metagenomes   Enterococcus faecium   Saccharomyces cerevisiae BY4741   Chlamydia trachomatis 434/Bu   Olavius algarvensis   Wolbachia endosymbiont of Onchocerca volvulus str. Cameroon   Pachycladon exile   Bemisia tabaci   Thalassiosira pseudonana   Plasmodium falciparum FcB1/Columbia   Bothrops asper   Mycoplasmopsis agalactiae   Vitis labrusca x Vitis riparia   Thermosynechococcus vestitus BP-1   Ovis aries   Mycobacterium tuberculosis variant bovis AN5   Anser cygnoides   Candidatus Thiosymbion oneisti   Plum pox virus   Apis mellifera ligustica   Trichomonas vaginalis   Tetrahymena thermophila   Stagonospora   Leishmania chagasi   phytoplankton environmental sample   Ferroplasma   Mycoplasmopsis bovis HB0801   Solanum lycopersicum x Solanum tuberosum   'Phaseolus vulgaris' phytoplasma   Brucella abortus   Staphylococcus pseudintermedius   Angiostrongylus cantonensis   Dugesia japonica   Komagataeibacter europaeus   Cecropia peltata   Dendrobium huoshanense   Brucella anthropi ATCC 49188   Murine leukemia virus   Acanthoscurria rondoniae   Strongyloides venezuelensis   Toxoplasma   Syntrophus aciditrophicus SB   environmental samples   Beauveria bassiana CGMCC 7.34   Neoporphyra haitanensis   Pseudomonas phage EL   Synechococcus elongatus PCC 7942 = FACHB-805   Neisseria meningitidis FAM18   Saccharum hybrid cultivar   Klebsiella pneumoniae MGH 78578   Coffea arabica   Sulfuritalea   Elaeis guineensis   Leucoraja erinacea   Mucidula mucida   Spiroplasma melliferum   Litoricola marina   Streptococcus pyogenes   Lachancea kluyveri   Deinococcus radiodurans   Gyrodactylus kobayashii   Agkistrodon contortrix   Sistrurus miliarius barbouri   Scylla paramamosain   Boehmeria nivea   Naja oxiana   Dolichospermum circinale AWQC310F   Kluyveromyces lactis NRRL Y-1140   Pseudodiploria clivosa   Fasciola hepatica   Malassezia sympodialis   Flavobacterium sp. 316   Bacillus amyloliquefaciens DSM 7 = ATCC 23350   Listeria phage A500   Human herpesvirus 5 strain AD169   Mycoplasma pneumoniae M129-B7   Ruminiclostridium papyrosolvens DSM 2782   Opisthorchis viverrini   Simulium damnosum s.l. Me1   Saturnispora dispora   Herpes simplex virus unknown type   Caretta caretta x Chelonia mydas   Amphimedon   Liquorilactobacillus nagelii   Metopolophium dirhodum   Roseibaca calidilacus   Acheta domesticus   Rhizobium favelukesii   Nicotiana quadrivalvis   Ophrys sphegodes   Allochromatium vinosum DSM 180   Phaeobacter sp. MED193   Malassezia pachydermatis   Dionaea muscipula   Salmonella enterica subsp. enterica serovar Typhi str. CT18   Orthopoxvirus   Candida albicans   Giardia intestinalis assemblage A   Panopea generosa   Lactococcus lactis subsp. cremoris UC509.9   Capra hircus   Medicago sativa   Trichoderma harzianum CBS 226.95   Chlamydomonas reinhardtii   Flavivirus   Prevotella ruminicola 23   Hendra virus horse/Australia/Hendra/1994   Brevibacterium casei   Neospora caninum   Lactococcus phage   Bacillus thuringiensis Bt407   Lactobacillus johnsonii N6.2   Anisakis simplex   Klebsiella pneumoniae subsp. pneumoniae DSM 30104 = JCM 1662 = NBRC 14940   Brucella abortus 2308   unclassified Bacillarnavirus   Bacillus mycoides DSM 2048   Macadamia   Mycobacterium tuberculosis SP10   Cuniculiplasma divulgatum   Oryctolagus cuniculus   Roseburia   Triticum turgidum subsp. durum   Granulicatella adiacens ATCC 49175   Amycolatopsis mediterranei S699   Caprinae   Lentimonas   Cladocopium goreaui   Micrurus fulvius   Neisseria gonorrhoeae   Cryptococcus neoformans var. grubii H99S   Escherichia coli O157:H7 str. TW14359   synthetic construct   Anacardium occidentale   Tyrannosaurus rex   Agaricus bisporus var. bisporus   Human immunodeficiency virus type 1 3916-CRO   Phytophthora capsici   Streptomyces coelicolor A3(2)   glacier metagenome   mouse gut metagenome   other sequences   Rhipicephalus microplus   Zygaena filipendulae   Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499   rhizosphere soil bacteria ensemble   Streptomyces sp.   Juglans regia   Thermochaetoides thermophila   Staphylococcus lugdunensis   Eriocheir sinensis   (Vitis vinifera x Vitis berlandieri) x Vitis berlandieri   Clostridium botulinum F str. Langeland   Eulimnogammarus cyaneus   Broussonetia papyrifera   Novosphingobium nitrogenifigens   Alcaligenes faecalis   Phormidium sp. OSCR   Cavia porcellus   Streptococcus equi subsp. equi   Nitrospirillum amazonense CBAmc   Macaca fascicularis   Bothrops neuwiedi   Ornithodoros moubata   Mesocricetus auratus   Cyprinus carpio   Chlamydia trachomatis L2/434/Bu(i)   Saccharomyces cerevisiae YJM789   Teleogryllus oceanicus   Mycolicibacterium smegmatis MC2 155   Venturia inaequalis   Acanthochromis polyacanthus   Nicotiana bonariensis   Equus asinus africanus   Alicycliphilus denitrificans BC   Musa AAB Group   Crocuta crocuta   Verticillium dahliae JR2   H1N1 subtype   Pristhesancus sp. 00004635   Bartonella quintana JK 31   Nostoc sp. FB71   Schizosaccharomyces pombe 972h-   Francisella orientalis FNO12   Orthomyxoviridae   Diaphorina citri   Tremella   Ferrimicrobium acidiphilum DSM 19497   Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14   Synechocystis sp. PCC 6803 substr. Kazusa   Methermicoccus shengliensis DSM 18856   Litoditis marina   Salmo salar   Hymenolepis microstoma   unidentified marine bacterioplankton   Streptomyces sp. MBT84   Serendipita vermifera MAFF 305830   Hepatitis C virus genotype 1   Bacillus mycoides NBRC 101238 = DSM 11821   Dehalococcoides mccartyi CBDB1   Haemophilus influenzae Rd KW20   Hadronyche infensa   Phoenix dactylifera   Ambrosiozyma philentoma   Saccharina japonica   Latilactobacillus curvatus   Xenopus laevis   Colinus virginianus   Tradescantia spathacea   Bifidobacterium pseudolongum   Pongo abelii   Halobacterium salinarum R1   Drosophila pseudoobscura   Human herpesvirus 4 type 1   Thermothelomyces thermophilus ATCC 42464   Pseudomonas fluorescens   Streptomyces lividans TK24   [Candida] glabrata CBS 138   Craterostigmus tasmanianus   Aedes aegypti densovirus   Acromyrmex echinatior   Lynx lynx   cf. Chlorella sp.   Sarcoptes scabiei   Polypodium hydriforme   Stylophora pistillata   Ophiophagus hannah   Rheum palmatum   Bartonella quintana   Actinomycetia   Pedobacter sp.   Campylobacter jejuni   Marchantia polymorpha   Quercus petraea   fungal sp. 5OL6-6PL1   Amblyomma sculptum   Dendroaspis polylepis polylepis   Galloanserae   Oryctolagus cuniculus cuniculus   Pseudomonas putida   Gynandropsis gynandra   Schistosoma mansoni   Pseudomonas jessenii   Coprococcus sp. ART55/1   Equus hydruntinus   Bienertia sinuspersici   Syntrophomonas wolfei   freshwater sediment metagenome   Clostridia   Thymallus thymallus   Pichia kudriavzevii   Acidithiobacillus ferrooxidans   Loxodonta africana   Roseburia inulinivorans DSM 16841   Erysipelothrix rhusiopathiae   Paulownia fortunei   Oryctolagus cuniculus algirus   Equisetum arvense   Schizosaccharomyces pombe OY26   Exidia glandulosa HHB12029   Triatoma dimidiata   Klebsiella aerogenes   Olavius algarvensis sulfate-reducing endosymbiont   Sordaria macrospora   Dentex dentex   Clostridioides difficile str. A-027   Listeria monocytogenes serotype 4b str. F2365   Chlorella sp. FC2 IITG   Saiga tatarica   Salmo sp.   Ascaris suum   Aspergillus terreus NIH2624   Gardnerella vaginalis   Pachycladon enysii   Pyricularia oryzae B157   uncultured Clostridium sp.   Oscillatoriaceae cyanobacterium   Methanohalophilus   Plasmodium berghei   Podospora anserina S mat+   Garcinia mangostana   Pseudomonas aeruginosa LESB58   Pygoscelis adeliae   Mastigamoeba balamuthi ATTC 30984   Cupiennius salei   Limosilactobacillus mucosae LM1   Pseudomonas aeruginosa PAO1H2O   Microcystis aeruginosa NIES-843   Bradyrhizobium japonicum   Daphnia   Eryx colubrinus loveridgei   Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   Ictidomys tridecemlineatus arenicola   Pseudomonas pseudoalcaligenes CECT 5344   Diplazium maximum   Vibrio anguillarum   Mylodon darwinii   Lithobius forficatus   Butyrivibrio proteoclasticus B316   Giardia intestinalis   Escherichia phage vB_EcoP_SU10   artificial sequences   Lachancea waltii NCYC 2644   Vipera berus berus   Olavius algarvensis Gamma 1 endosymbiont   Agkistrodon piscivorus   Schistosoma haematobium   Drosophila   Leishmania tropica   Leishmania donovani Ld 2001   Burkholderia dolosa AU0158   Aspergillus niger   Ostreococcus tauri   Populus tomentosa   Sanghuangporus   Stichodactyla haddoni   Botrytis cinerea T4   unclassified Thermococcus   Apis mellifera   Ctenopharyngodon idella   Mycobacterium tuberculosis M24   Bartonella henselae str. Houston-1   Photobacterium profundum SS9   Penicillium sp. B12   Rosa chinensis   Neisseria meningitidis MC58   Nicotiana sylvestris   Fusarium cf. oxysporum   Erythrobacter sp. HL-111   Ambystoma mexicanum   Pseudomonas sp. UK4   Influenza A virus (A/Aichi/68/2007(H3N2))   Pseudotsuga menziesii   Teseptimavirus T7   Schizosaccharomyces pombe DM3650   Streptomyces venezuelae   Streptomyces lincolnensis   Momordica cochinchinensis   Acinetobacter baumannii AB_TG2631   uncultured Desulfobacterium sp.   Crithidia fasciculata   Candidatus Margulisbacteria   Gammarus roeselii   Nicotiana x sanderae   Lacticaseibacillus rhamnosus   Pinus nigra   Tuber indicum   Shigella sonnei 53G   Ruegeria pomeroyi   Pseudomonas aeruginosa   Bungarus   Sulfolobus islandicus LAL14/1   Homo   Vulpes vulpes   Triatoma sordida   Dictyostelium discoideum   Wheat dwarf virus - [Taiyuan]   Lasius niger   Listeria monocytogenes   Tannerella forsythia 92A2   Conus zonatus   Paenibacillus polymyxa   Cellulophaga baltica 18   Nicotiana glauca   Firmicutes   Eubacterium limosum   Bivalvia   Burkholderia cenocepacia   Staphylococcus haemolyticus   Scophthalmus maximus   Staphylococcus aureus subsp. aureus USA300_FPR3757   Heliocidaris erythrogramma   Pseudomonas stutzeri   Tospovirus kiwifruit/YXW/2014   Candidatus Kuenenia stuttgartiensis   Oomycota   Capreolus capreolus   bioreactor sludge metagenome   Scutigera coleoptrata   Lilium   Oenococcus oeni   Desulforamulus reducens MI-1   Anaerostipes caccae L1-92   Oryza australiensis   Tetronarce californica   environmental samples   Limosilactobacillus fermentum CECT 5716   Musa ABB Group   Penicillium verrucosum   Nothobranchius furzeri   Clavibacter michiganensis subsp. michiganensis NCPPB 382   Lagenaria siceraria   Caballeronia mineralivorans   Mus musculus x Rattus norvegicus   Musa acuminata subsp. acuminata   Leptopilina   Noccaea caerulescens   Fusarium fujikuroi IMI 58289   Modiolus kurilensis   Camelidae   Aspergillus giganteus   Kalanchoe fedtschenkoi   Shigella flexneri   Methanospirillum hungatei JF-1   Panagrolaimus   Thermoplasma acidophilum DSM 1728   Cenchrus americanus   soil metagenome   Conus caracteristicus   Betacoronavirus sp.   Trichoderma reesei QM6a   Acinetobacter sp. PM-14   Neosciurus carolinensis   Rhizobium sp. CIAT652   Valsa mali   Zoanthus sp.   Vibrio vulnificus VV   Tepidimicrobium xylanilyticum   Sorangium cellulosum So ce56   Pyrococcus abyssi   Aspergillus oryzae var. oryzae   Dioscorea oppositifolia   Nitrospira marina Nb-295   Salmonella enterica subsp. enterica serovar Typhimurium str. A130   Bothrops leucurus   Candida parapsilosis   Acanthoscurria gomesiana   Beauveria bassiana   Pseudomonas sp. 'Pseudom. M1'   Bursaphelenchus xylophilus   Corallium rubrum   Helianthus tuberosus   Rhizobium leguminosarum bv. phaseoli CCGM1   Francisella tularensis subsp. novicida U112   Lactobacillus iners   Bothrops cotiara   Loxosceles intermedia   Anopheles culicifacies B   Leptospermum scoparium   Lolium arundinaceum   Philodryas patagoniensis   Anopheles culicifacies A   Mycobacterium tuberculosis CAS   Lactococcus lactis subsp. lactis Il1403   Hyphomicrobium sp. MC8b   Brochothrix thermosphacta   Rickettsia conorii subsp. raoultii   Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   Brassica oleracea var. botrytis   Hypsiglena jani   Pseudodiploria strigosa   Xanthomonas retroflexus   Giardia lamblia ATCC 50803   Xylocopa violacea   Thermus thermophilus   Chelodina longicollis   Scheffersomyces stipitis   Acholeplasma laidlawii PG-8A   Bordetella parapertussis   Toxoplasma gondii   Polytomella parva   Aspergillus sydowii   Cellvibrio japonicus Ueda107   Influenza A virus (A/California/07/2009(H1N1))   Palaemon carinicauda   Pasteurella multocida subsp. multocida str. Pm70   Populus trichocarpa   anaerobic digester metagenome   Cylindrospermopsis raciborskii CS-506   Brassica napus   Catenibacterium   Klebsiella pneumoniae JH1   Manica rubida   Aspergillus carbonarius ITEM 5010   Alternaria tomato   Cupriavidus pinatubonensis JMP134   Bemisia cf. tabaci Middle East-Asia Minor 1   Scolopendra morsitans   Bactrocera dorsalis   Saccharomyces cerevisiae S288C   Anopheles gambiae   Aplysia californica   Diploria labyrinthiformis   Haloferax volcanii DS2   Influenza A virus (A/Wilson-Smith/1933(H1N1))   unclassified Marseilleviridae   Corynebacterium diphtheriae NCTC 13129   Mycobacterium marinum ATCC BAA-535   Toxoplasma gondii GT1   Naja ashei   Geobacillus kaustophilus HTA426   Mycobacterium tuberculosis LAM7   Nicotiana glutinosa   Saccharum hybrid cultivar x Sorghum bicolor   Paenibacillus amylolyticus   Sedum plumbizincicola   Spongospora subterranea   Clostridium autoethanogenum   Salmonella enterica subsp. enterica serovar Cerro   Cicer arietinum   Burkholderia thailandensis   Coffea canephora   Anguilla anguilla   Pichia fermentans   Bos grunniens   Enterococcus faecalis   Escherichia coli Nissle 1917   Shewanella baltica   Mycoplasma hyopneumoniae 232   Cellulophaga baltica NN016038   Solanum lycopersicum   Lactiplantibacillus plantarum WCFS1   mixed culture metagenome   Burkholderia ubonensis MSMB22   Bacillus cereus ATCC 10987   Mycobacterium tuberculosis variant bovis   Coxiella burnetii   Alces alces   Legionella pneumophila subsp. pneumophila   Brachyspiraceae   Macaca fascicularis fascicularis   Ogataea polymorpha   Sistrurus catenatus   Medicago truncatula   Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120200   Leishmania sp. MHOM/IN/80/DD8   Dehalococcoides mccartyi   Candidatus Nitrospira inopinata   Aggregatibacter actinomycetemcomitans   [Candida] boidinii   Halobacterium   Dreissena polymorpha   Lathyrus sativus   Strix varia   Bacillus subtilis subsp. subtilis   Lactiplantibacillus plantarum subsp. plantarum   Bordetella pertussis   Chlamydia trachomatis L2/434/Bu(f)   Dialister   Mayaro virus (strain Brazil)   Human betaherpesvirus 5   Panthera leo   Lactobacillus   Cowpox virus   Naja annulifera   Desulfoluna spongiiphila   human gut metagenome   Pteropus alecto   Klebsiella pneumoniae ATCC 43816   Mus musculus   Mucilaginibacter   Microbiota   Staphylococcus lugdunensis N920143   Mycobacterium tuberculosis variant bovis BCG   Dictyostelium discoideum AX4   Equidae   soil bacterium 10G-05   Castor   Rhodopseudomonas palustris CGA009   Aeropyrum pernix   Bacillus cereus   Lentinula edodes   Mycobacterium avium subsp. paratuberculosis   Dinosauria   Vaccinia virus   Telmatactis   Exiguobacterium sp. SH31   Acetivibrio thermocellus   Crassostrea hongkongensis   prokaryotic environmental samples   Yersinia ruckeri   Delonix regia   Bacillus thuringiensis serovar berliner ATCC 10792   Acidovorax citrulli   Agaricus bisporus   Doryteuthis pealeii   Zea mays   Mariprofundus ferrooxydans   Chryseobacterium indologenes   Glycine max x Glycine soja   Aspergillus flavus partitivirus 1   Ovis canadensis mexicana   Synechococcus phage S-SSM7   Aeropyrum pernix K1   Paracoccidioides brasiliensis Pb18   Clostridium botulinum A str. Hall   Glia   Mus musculus wagneri   Trichomonas vaginalis G3   Secale cereale   Shewanella oneidensis MR-1   Chloromonas nivalis   Sciuridae   Heterorhabditis megidis   Phytophthora sojae   Salmonella enterica subsp. enterica serovar Typhimurium str. 5579   Onchocerca ochengi   Cyanidioschyzon merolae   Candida tropicalis   Candidatus Accumulibacter   Megaloceros giganteus   Clematis chinensis   Morganella   Cyanistes caeruleus   Leptospira interrogans   Citrus sinensis   Santalum album   Lentilactobacillus kefiri   Candidatus Riegeria   Spondylus gaederopus   Chromatiales bacterium OalgGamma1   Human coronavirus HKU1   Mycoplasma gallisepticum   Blumeria graminis f. sp. tritici   Canis lupus x Canis lupus familiaris   Brassica oleracea var. gemmifera   Fagus grandifolia   Eukaryota   Conus striatus   Saccharomyces cerevisiae   Pseudomonas aeruginosa str. E2UoS   Clostridioides difficile ATCC 43255   Ursus arctos   Streptococcus pyogenes ABC020006030   Castor canadensis   Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   Haberlea rhodopensis   Methanosarcina acetivorans   Klebsiella variicola At-22   Microcystis aeruginosa   Corynebacterium glutamicum K051   Triticum monococcum subsp. monococcum   Helianthus annuus   HIV-1 M:G_PT919   Dryopteris affinis subsp. affinis   [Ruminococcus] gnavus   Laurasiatheria   Ornithodoros erraticus   Salmonella enterica subsp. enterica serovar Typhimurium str. ST1489   Quercus   Acinetobacter sp.   Botryococcus braunii   Streptomyces avidinii   Laodelphax striatellus   Azospirillum brasilense FP2   Pseudomonas aeruginosa LESlike1   Prevotella bryantii B14   Heligmosomoides polygyrus bakeri   microbial mat metagenome   Klebsiella pneumoniae   Mytilus edulis/galloprovincialis MCLGV-2007   Camellia sinensis   Ophrys garganica   Schizophyllum commune H4-8   Saccharolobus solfataricus   Human immunodeficiency virus 1   Ursus americanus   Sulfolobus islandicus REY15A   Mycobacterium tuberculosis TKK-01-0032   Moraxella catarrhalis   Passer domesticus domesticus   Axis axis   Schizosaccharomyces pombe   Mammuthus primigenius   Dimocarpus longan   Trichinella britovi   Brucella   Alligator mississippiensis   Komagataella pastoris DSMZ 70382   Orbicella faveolata   Hepatitis E virus type 1   Oncorhynchus mykiss   Clostridium butyricum E4 str. BoNT E BL5262   Sepia officinalis   Candidatus Brocadia sapporoensis   Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759   Mustela sp.   Cedrela fissilis   Thermococcus eurythermalis   Strongylocentrotus purpuratus   Cynodon dactylon   Populus yunnanensis   Mycobacterium tuberculosis H37Ra   Vibrio cholerae   Rupicapra pyrenaica   Oryza longistaminata   Gossypium   Dactylorhiza   Manihot esculenta   Orycteropus afer   Struthio camelus   Eucalyptus   Paramoeba perurans   Thermococcus kodakarensis KOD1   Nannochloropsis oceanica strain IMET1   Hevea brasiliensis   Tetraponera aethiops   Halomonas sp. TD01   Musa   Vicia faba   Listeria monocytogenes serotype 4b   Nicotiana plumbaginifolia   Frankia alni ACN14a   Foeniculum vulgare   Heloderma suspectum suspectum   Hippoglossus hippoglossus   Stephanorhinus   Lactobacillus crispatus   Tritrichomonas foetus   Deinococcus deserti VCD115   Trichodesmium erythraeum IMS101   Naegleria fowleri   unidentified   Populus tremula x Populus alba   Coprococcus comes ATCC 27758   Octopus vulgaris   Clostridium butyricum DSM 10702   Aspergillus tubingensis   Brassica oleracea   Capra ibex   Brenneria nigrifluens   Klebsiella pneumoniae BIDMC 40   Hominidae   Mycoplasma hominis ATCC 23114   Bombyx mori   Cervus nippon nippon   Selenomonas sputigena ATCC 35185   Prunus avium   Sparus aurata   Coxiella-like endosymbiont of Rhipicephalus sanguineus complex   Candidatus Profftella armatura   Ursus arctos arctos   Leishmania major   Rickettsia massiliae MTU5   Equus sp.   Phlebotomus papatasi   Melioribacter roseus P3M-2   Brachylophosaurus canadensis   Bacillus cereus F837/76   Anoplocephala perfoliata   Brugia malayi   Stenotrophomonas maltophilia   Nostoc punctiforme PCC 73102   Vairimorpha necatrix   Anas platyrhynchos   Parasteatoda tepidariorum   Lingulodinium polyedra   Bacillus subtilis   Nematostella vectensis   Ascoidea rubescens   Botrytis cinerea   Piscirickettsia salmonis AUSTRAL-005   Colpophyllia natans   Streptococcus thermophilus   Bacteroides caccae   Phascolarctos cinereus   Desulfovibrio ferrophilus   Boiga irregularis   Halomonas sp. HL-48   Pythium sp. PV So7   Physcomitrella   Xanthomonas translucens   Paenibacillus polymyxa ATCC 842   Musa acuminata AAA Group   Petunia   Callinectes sapidus   Helicobacter hepaticus   Lichtheimia corymbifera JMRC:FSU:9682   Prochlorococcus marinus subsp. pastoris str. CCMP1986   Calvadosia cruxmelitensis   Rosaceae   Colwellia psychrerythraea 34H   Brassica oleracea var. alboglabra   Andreprevotia sp. IGB-42   Synechocystis sp. PCC 6803 substr. GT-I   Streptococcus pneumoniae SP14-BS69   Brassica oleracea var. capitata   Delftia acidovorans SPH-1   Staphylococcus epidermidis   Neospora caninum Liverpool   Mycobacterium tuberculosis SP1   Serpentes sp. WLS21042014   Renibacterium salmoninarum ATCC 33209   Yersinia pestis CO92   Clostridium tetani E88   Saccharomycopsis capsularis   Lactobacillus johnsonii   Asterias rubens   Francisella tularensis subsp. holarctica LVS   Bacillariophyta   environmental samples   Haemaphysalis longicornis   Ficus carica   Clostridium cellulovorans 743B   Brassica carinata   Martes martes   Moneuplotes crassus   Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130   Tilletia caries   Hypsizygus marmoreus   Nerodia clarkii   Bothrops jararaca   Caldanaerobacter subterraneus subsp. tengcongensis MB4   Rhodotorula toruloides   Bacillus toyonensis BCT-7112   Campylobacter concisus UNSWCD   Rickettsia rickettsii   Viruses   Streptococcus pneumoniae D39   Tuber albidum   Mus   Helicobacter pylori 26695-1   Methylorubrum extorquens PA1   environmental samples   Aspergillus brasiliensis   Agrobacterium tumefaciens   Felis catus   Listeria monocytogenes EGD   Streptococcus agalactiae FSL S3-026   Aliivibrio fischeri   Thermococcus gammatolerans   Glycine max   Chlorobaculum tepidum   Serratia phage JS26   Klebsiella pneumoniae ATCC BAA-2146   Enterococcus faecium DO   Geobacillus stearothermophilus   Trypanosoma cruzi Dm28c   Cajanus cajan   Botrytis cinerea B05.10   Cervus elaphus   Syntrophobacter fumaroxidans MPOB   Fusobacterium nucleatum subsp. nucleatum ATCC 25586   Helicoverpa armigera   Apis mellifera pomonella   Blumeria hordei DH14   Trypanosoma cruzi   Listeria phage A118   Trypanosoma cruzi cruzi   Melopsittacus undulatus   Myxococcus xanthus DZ2   Nitrospira moscoviensis   Staphylococcus aureus subsp. aureus COL   Lineus longissimus   Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   Bovine leukemia virus   Populus tremula x Populus tremuloides   Cercopithecidae   Carya cathayensis   Bacillus amyloliquefaciens   Salmonella enterica subsp. enterica serovar Typhimurium   Gorilla   Dendroaspis angusticeps   Brassica rapa   Rhodococcus jostii RHA1   Cervus elaphus elaphus   Streptomyces sp. EF-93   Rhizobium sp. Leaf68   Streptococcus mutans UA159   Sulfolobus islandicus   Ectocarpus siliculosus   uncultured soil microorganism   Roseobacter denitrificans OCh 114   Human papillomavirus type 16   Thelohanellus kitauei   Rhizobium leguminosarum bv. viciae   Microbacterium sp.   Dickeya dadantii subsp. dadantii   Fusarium graminearum   Lotus japonicus   Cryptosporidium parvum   Nitrososphaera viennensis   Ictidomys tridecemlineatus   Streptococcus pyogenes STAB901   Dokdonia sp. MED134   Fusarium oxysporum f. sp. lycopersici 4287   Mammuthus sp.   Coronavirus PREDICT CoV-2   Faecalibacterium prausnitzii   Yersinia pseudotuberculosis   Dioscorea alata   Amblyrhynchus cristatus   Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044   Manduca sexta   Human coronavirus NL63   Paenibacillus sp.   Erysipelatoclostridium ramosum DSM 1402   Lolium multiflorum   Selaginella moellendorffii   Trichomonas gallinae   Notamacropus eugenii   Xenopsylla cheopis   Arabidopsis thaliana   Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_50_11   Mycobacterium tuberculosis   Rhodospirillum rubrum ATCC 11170   Nosema ceranae   Arion vulgaris   Prochlorococcus marinus str. MIT 9313   Legionella   Magnaporthe sp. MG05   Oleidesulfovibrio alaskensis G20   gut metagenome   Plasmodium vivax Sal-1   Mahonia   Amphistegina lobifera   Macaca mulatta   Fraxinus mandshurica   Methanothermobacter thermautotrophicus   Arachis hypogaea var. vulgaris   Myxobolus honghuensis   Geobacillus kaustophilus   Formosa sp. Hel3_A1_48   Pongo sp.   Amblyomma cajennense   Heterocephalus glaber   Ianthella basta   Kuraishia capsulata   Mycoplasma feriruminatoris   Mycobacterium tuberculosis H37RvAE   Vibrio fluvialis   Carnobacterium maltaromaticum   Armoracia rusticana   Hermarchus sp. HER2   Tilletia indica   Fusarium sp.   Minona ileanae   Lactuca sativa   Spodoptera frugiperda   Montastraea cavernosa   Bradyrhizobium diazoefficiens   Bacteria   Myotis ricketti   Agrobacterium fabrum str. C58   Glossina morsitans   Sepioloidea lineolata   Toxoplasma gondii ME49   Escherichia coli   Aiptasia   Cyberlindnera jadinii   Arabidopsis   Xanthomonas campestris pv. vesicatoria str. 85-10   Laxus oneistus   Drosophila simulans   Mustela putorius furo   Caulobacter vibrioides NA1000   Tuber magnatum   Coelodonta antiquitatis   unidentified chimeric sequence   Bacillus cytotoxicus NVH 391-98   Escherichia coli K-12   Francisella tularensis   Burkholderia pseudomallei K96243   Komagataella phaffii   Artemisia annua   Beta vulgaris   wastewater metagenome   Nicotiana maritima   Arcobacter   Corynebacterium diphtheriae   Beta vulgaris subsp. vulgaris   Sturnus vulgaris   Viridiplantae   Aspergillus fumigatus   Daphnia pulex   Anopheles gambiae str. PEST   Vibrio cholerae O1 str. VC91   Enchytraeus crypticus   Saccharopolyspora erythraea   Geodermatophilus obscurus DSM 43160   Ecrobia   Dichomitus squalens   Bothrops insularis   Lactiplantibacillus plantarum JDM1   Arvicola   Modestobacter marinus BC501   Spirochaeta sp. ELBA   Spheniscus demersus   Thalassiosira cf. oceanica   Avena sativa   Nicotiana alata   Hebomoia glaucippe   Mycobacterium tuberculosis H37Rv_2009   Clostridium perfringens   Mycoplasma pneumoniae M29   Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819   Fusarium oxysporum f. sp. conglutinans Fo5176   Halobacterium salinarum   Taenia hydatigena   Salmonella enterica subsp. enterica serovar Typhimurium str. 14028s Wu   Nicotiana paniculata   Pseudomonas composti   Capra pyrenaica   Capsaspora owczarzaki   Bacillus pumilus   Trypanosoma   Muvirus mu   Bacillus sp. 142311   Candidatus Pelagibacter ubique   Filifactor alocis   Willaertia magna   Escherichia coli str. K-12 substr. MG1655   Mycobacterium avium subsp. paratuberculosis K-10   Toxoplasma gondii PRU   Helicobacter pylori H13-1   Citrus wilsonii   Siphoviridae   Naja nigricincta nigricincta   Phaeocystis antarctica   Peniophora incarnata   Blastococcus saxobsidens   Ciona robusta   Fusarium graminearum PH-1   Tetratrichomonas gallinarum   Schizosaccharomyces pombe 927   Plasmodium yoelii yoelii 17XNL   Candidatus Carsonella ruddii DC   Channa striata   Onchocerca volvulus   Synechococcus elongatus   Fibrobacter succinogenes subsp. succinogenes S85   Burkholderia cenocepacia J2315   Paradendryphiella salina   Bothrops jararacussu   Pseudomonas putida F1   Leishmania braziliensis MHOM/BR/75/M2904   albimanus section   Influenza B virus (B/Memphis/13/2003)   Puccinellia tenuiflora   Vulpes lagopus   Mycoplasma pneumoniae M129   Polaribacter marinivivus   Strigamia maritima   Leptospirillum   Frankliniella sp. BIOUG14947-G11   Trypanosoma vivax Y486   Dorea longicatena DSM 13814   Cupriavidus necator N-1   Clostridioides difficile 630   Haloferax volcanii   Serpentes   Wolbachia sp. wMelPop   Bacillus altitudinis   Allexis   Bombus terrestris audax   Parasynechococcus marenigrum WH 8102   Escherichia coli HT115   Cytophaga hutchinsonii   Trichinella pseudospiralis   Lagomorpha   Proteus mirabilis HI4320   Euterpe oleracea   Citrus hybrid cultivar   Crotalus adamanteus   Cyprinodon variegatus   Halorubrum lacusprofundi ATCC 49239   Human alphaherpesvirus 1 strain 17   Magnetospirillum gryphiswaldense   Pseudoalteromonas sp. D41   Mycobacterium avium 100   Tamias striatus   Candidatus Endoriftia persephone   Pyrenochaeta sp.   Fungi   Solanum peruvianum   Cellulomonas gilvus ATCC 13127   Ursus maritimus   unclassified Candidatus Omnitrophica   Desulfovibrio sp. G11   Rousettus aegyptiacus   Jatropha curcas   Conus betulinus   Aeromonas sp. enrichment culture clone AM2   Escherichia coli O157:H7   HIV-1 vector pNL4-3   Pinus pinaster   Phytophthora infestans   Yersinia pestis   Chlorocebus aethiops   Frankia alni   Porphyromonas gingivalis   Afipia carboxidovorans   Citrobacter rodentium   Tepidanaerobacter acetatoxydans   Pituophis melanoleucus   Actinomycetospora chiangmaiensis DSM 45062   Solanum tuberosum   Human immunodeficiency virus   Mytilus sp. CHGF4   Lysiphlebus fabarum   Acipenser   Glycine soja   Bicyclus anynana   Dolichospermum circinale AWQC131C   Fusarium graminearum GZ3639   Haemophilus influenzae   Corynebacterium diphtheriae bv. mitis str. ISS 3319   Mycobacterium tuberculosis K   Granulicella sp.   Papaver somniferum   Caryophyllales   Bordetella bronchiseptica RB50   Madurella mycetomatis   Desulfofundulus kuznetsovii DSM 6115   Sporocytophaga myxococcoides   Human alphaherpesvirus 1   Eimeria acervulina   Bacillus licheniformis   Gorilla gorilla   Ophrys x arachnitiformis subsp. archipelagi   Homo sapiens   Rhodopseudomonas palustris   Candidatus Methylomirabilis oxyfera   Spironucleus salmonicida   Vibrio parahaemolyticus   Streptomyces coelicolor   Malus domestica   Lipomyces starkeyi   Rhizobium cf. leguminosarum   Aspergillus flavus FRR 342   Pseudomonas syringae pv. syringae   Soa   Coxiella burnetii RSA 493   Plasmodium falciparum   Babjeviella inositovora   Saccharum officinarum   Leishmania tarentolae   Trichoderma reesei RUT C-30   Yersinia enterocolitica   Megoura viciae   Meleagris gallopavo   Andrias davidianus   Plasmodium falciparum 58.1   Nicotiana longiflora   Eggerthella phage P3   Haemophilus haemolyticus   Mycobacterium tuberculosis SP13   Pogonomyrmex rugosus   Varroa destructor   Rickettsia akari   Lactococcus lactis subsp. cremoris MG1363   Acinetobacter baumannii 1656-2   Zymomonas mobilis   Tetrahymena thermophila SB210   Eremothecium gossypii   Bacillus pseudomycoides DSM 12442   uncultured microorganism   Viola tricolor   Pyricularia oryzae P131   Pseudomonas aeruginosa UCBPP-PA14   Rhodnius prolixus   Hydrolagus colliei   soil bacterium TS1114R   uncultured Phormidium sp.   Schistosoma japonicum   Daphnia magna   Inquilinus limosus   Spiroplasma melliferum KC3   Papio hamadryas   Thermococcus gammatolerans EJ3   Serratia inhibens PRI-2C   Lobaria pulmonaria   Castor fiber   Viola   Leishmania major strain Friedlin   Riftia pachyptila   Helicobacter pylori A45   Mytilus edulis   Porphyromonas gingivalis ATCC 33277   Human herpesvirus 4 strain B95-8   Myxobilatus gasterostei   Saccostrea glomerata   Sus scrofa domesticus   Xanthomonas campestris   Pseudo-nitzschia delicatissima   Synechococcus sp.   Dickeya solani   Blautia producta ATCC 27340 = DSM 2950   Paracoccus denitrificans   Saccharum hybrid cultivar SP80-3280   Naja mossambica   Sinorhizobium americanum   Malassezia sympodialis ATCC 42132   Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   Pinus taeda   Campylobacter fetus subsp. fetus 82-40   Equus asinus   Piaractus mesopotamicus   Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456   Lolium perenne subsp. perenne   Acanthamoeba polyphaga mimivirus   Naja pallida   Gasterosteus aculeatus   Buddenbrockia plumatellae   Cassiopea xamachana   Gallus   uncultured marine microorganism   Dinoroseobacter shibae DFL 12 = DSM 16493   Merluccius bilinearis   Aspergillus flavus NRRL3357   Petunia x hybrida   Bacillus anthracis str. Sterne   Sinorhizobium meliloti   Aeromonas salmonicida subsp. salmonicida   Harmonia axyridis   Apteronotus leptorhynchus   Linnemannia elongata AG-77   Phytophthora infestans T30-4   Xanthomonas citri pv. glycines str. 8ra   Viola odorata   Pogona vitticeps   Bodo saltans   Bithynia siamensis goniomphalos   Cupriavidus metallidurans   Trichoderma sp. 1 YW-2011   Japanese encephalitis virus   Arachis hypogaea   Rathayibacter toxicus   Synechococcus sp. YX04-3   Rhipicephalus sanguineus complex sp. ME-2011   Lentinus crinitus   Acanthamoeba polyphaga   Trifolium pratense subsp. pratense   Fusarium oxysporum f. sp. lycopersici   Meyerozyma guilliermondii   Acidiphilium cryptum JF-5   Myzus persicae persicae   Rhynchocyon petersi   Desmodesmus subspicatus   Candidatus Thioglobus autotrophicus   Brassica oleracea var. italica   Coprothermobacter proteolyticus   Phaeodactylum tricornutum   Ecrobia ventrosa   Influenza A virus (A/California/07-00002/2009(H1N1))   Myodes glareolus   Sarcophilus harrisii   Panax ginseng   Crassostrea gigas   Hepatitis B virus   Aspergillus aff. niger A2   Quercus ilex   Pachycladon novaezelandiae   Myotis lucifugus   Bacillus subtilis subsp. subtilis str. 168   Mycobacterium marinum   Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2   Flavobacterium columnare   Francisella tularensis subsp. tularensis   Amaranthus tricolor   Euzebya tangerina   Tomato spotted wilt orthotospovirus   Lactococcus lactis   Strawberry leafy fruit phytoplasma   Saimiri boliviensis boliviensis   Vespula vulgaris   Ensifer adhaerens   Legionella pneumophila subsp. pneumophila str. Philadelphia 1   Drosophila mauritiana   Enhydra lutris nereis   Aves   Fusarium oxysporum Fo47   Francisella tularensis subsp. holarctica FSC200   Liquorilactobacillus hordei   Schistocephalus solidus   Alteromonas macleodii ATCC 27126   Streptococcus uberis   Enterococcus mundtii CRL35   Chenopodium quinoa   Salmonella bongori   Archaea   Riptortus pedestris   Chlorella vulgaris   Candidatus Midichloriaceae   Cylindrospermopsis raciborskii CS-509   Corucia zebrata   Shigella dysenteriae   Crotalus durissus terrificus   Pseudomonas aeruginosa PAO1   Clostridium saccharoperbutylacetonicum   Elymus sibiricus   Citrullus lanatus   Nicotiana benthamiana   Gallus gallus   Nannospalax galili   Methanothrix   Thermus thermophilus HB8   Actinoplanes sp. SE50/110   Malassezia globosa   Sophora alopecuroides   Roseobacter sp. MED193   Oryza sativa Japonica Group   Nanger dama mhorr   Nicotiana clevelandii   Secale cereale x Triticum turgidum subsp. durum   Prevotella intermedia ATCC 25611 = DSM 20706   Acanthaster planci   Peromyscus leucopus   Aggregatibacter actinomycetemcomitans D7S-1   Escherichia coli str. K-12 substr. W3110   Rhodothermus marinus DSM 4252   Craterostigma plantagineum   Vitis riparia x Vitis rupestris   Geobacter sulfurreducens   Marthasterias glacialis   Paracentrotus lividus   Staphylococcus aureus subsp. aureus USA300_TCH1516   Physcomitrium patens   Platichthys flesus   Toxoplasma gondii CtCo5   Mycobacterium tuberculosis str. Beijing/W BT1   Aerococcus urinae NBRC 15544 = CCUG 36881   Bacteroides thetaiotaomicron VPI-5482   Meandrina meandrites   Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821   Plutella xylostella   Acanthamoeba castellanii str. Neff   Crotalus horridus   Colobus guereza   Nepenthes ampullaria   Staphylococcus aureus subsp. aureus   Shigella flexneri 2a str. 2457T   Paracatenula sp. 'standrea' Elba   Pseudotsuga menziesii var. menziesii   Sorghum bicolor x Saccharum hybrid cultivar   Euphorbia characias   Corynebacterium glutamicum ATCC 13032   Ecrobia maritima   Sepiadarium austrinum   Acesta excavata   Avian infectious bronchitis virus (strain Beaudette CK)   Hyalella azteca   Thermochaetoides thermophila DSM 1495   Synechocystis sp. PCC 6803 substr. PCC-P   Lymnaea stagnalis   Persicaria minor   Acanthamoeba castellanii   Pectobacterium carotovorum   Human herpesvirus 5 strain Merlin   Tachaea chinensis   Serendipita vermifera 'subsp. bescii'   Enterobacter cloacae   Myxobolus wulii   Saccharomyces cerevisiae EC1118   Roseburia hominis A2-183   Leishmania mexicana   Candida parapsilosis CDC317   Datura stramonium   Sphingomonas sp. Leaf257   marine metagenome   mixed sample   Homo sapiens subsp. 'Denisova'   Daboia russelii   Drosophila melanogaster   Heterosigma akashiwo   Danio rerio   Tomato yellow leaf curl virus   Streptococcus pneumoniae R6   Leuconostoc gelidum subsp. gasicomitatum   Microbacterium oxydans   Oryctolagus sp. 'Rabbit_OD'   Bothrops moojeni   Ovis   Durusdinium trenchii   Aepyceros melampus   Dasypogon diadema   Zymoseptoria tritici IPO323   Ixodes scapularis   Neurospora crassa   Aspergillus wentii   Myxococcus xanthus DK 1622   Nelumbo nucifera   Breviolum minutum   Toxoplasma gondii RH   Influenza A virus (A/WSN/1933(H1N1))   Oryza sativa   Nakazawaea wickerhamii   Human alphaherpesvirus 1 strain KOS   Tetrahymena thermophila CU428   Histomonas meleagridis   Helicoverpa armigera armigera   Polyporus umbellatus GSX09   Oncorhynchus tshawytscha   Ailuropoda melanoleuca   Synechococcus sp. BL107   Sulfurihydrogenibium   Avicennia officinalis   Francisella tularensis subsp. holarctica   Nostoc sp.   Mammalia   Naja naja   Aedes albopictus   Aspergillus aculeatus ATCC 16872   Dirofilaria immitis   Cutibacterium acnes SK137   Cyclopes didactylus   Pan troglodytes   Leuconostoc gelidum subsp. gelidum   Candidatus Protochlamydia amoebophila UWE25   Scorpaena plumieri   Dictyostelia   Chlorocebus sabaeus   Cricetidae   Gigantopelta aegis   Levilactobacillus brevis   Peterozyma xylosa   Haptophyta   Synechococcus phage syn9   Streptomyces griseorubens   Gossypium hirsutum   Sterolibacterium denitrificans   Bacteria incertae sedis   Moringa oleifera   [Ruminococcus] gnavus ATCC 29149   Helicobacter pylori 26695   Staphylococcus saprophyticus   Brucella melitensis   Streptococcus equi subsp. equi 4047   Python molurus   Micrurus tener   Equus caballus   Methylorubrum extorquens DM4   Brucella abortus 104M   Norovirus   Mycobacteroides abscessus   Tetropium castaneum   Chlamydomonas reinhardtii CC3269   Russula atropurpurea   Murine hepatitis virus strain A59   Ralstonia solanacearum GMI1000   Phytophthora capsici LT1534   Cryptococcus neoformans var. grubii H99   environmental samples   Neisseria gonorrhoeae FA 1090   Rapana venosa   Cuon alpinus   Amblyomma americanum   Kryptolebias marmoratus   Clostridium cellulovorans   Tuber melanosporum Mel28   Theobroma cacao   Pachycladon cheesemanii   Tilletia laevis   Porphyromonas gingivalis W83   Pyricularia oryzae   Gadus morhua   Paracoccidioides lutzii Pb01   Capsicum annuum   Toxoplasma gondii GAB3-2007-GAL-DOM9   Pandanus amaryllifolius   SARS bat coronavirus   Pseudomonas aeruginosa PAK   Ceuthophilus sp. Ceu_104_TX_San_Rattlesnake   Homo sapiens/Mus musculus xenograft   Treponema   Entamoeba histolytica HM-1:IMSS   Tubastraea coccinea   Streptomyces sp. MBT42   Planococcus halocryophilus Or1   Austrolebias   Mycobacteroides abscessus ATCC 19977   Bacillus weihenstephanensis   Stylosanthes guianensis   Wolbachia endosymbiont of Diaphorina citri   Plasmodium yoelii   Eimeria tenella   Deinococcus radiodurans ATCC 13939   Bradyrhizobium diazoefficiens USDA 110   Paulownia   Olea europaea   Clostridioides difficile R20291   Hippopotamus amphibius   Ovis aries musimon   Globicatella sanguinis   Trypanosoma cruzi strain CL Brener   Olavius algarvensis Gamma 3 endosymbiont   Pseudoliparis swirei   Dehalococcoides mccartyi CG1   Rattus rattus   Chroococcidiopsis thermalis PCC 7203   Pseudovibrio sp. FO-BEG1   Trichodesmium   Emiliania   Olavius algarvensis Delta 1 endosymbiont   Actinidia chinensis var. chinensis   Triticum aestivum   Sorghum bicolor   Tribolium castaneum   human metagenome   Coccinia grandis   Citrus maxima   Anneissia japonica   Trichoderma reesei QM9414   Thalassiosira oceanica CCMP1005   Leishmania mexicana MHOM/GT/2001/U1103   Neisseria meningitidis serogroup B   Passer hispaniolensis   Osphranter rufus   Sinorhizobium americanum CCGM7   Clavibacter michiganensis subsp. nebraskensis NCPPB 2581   Sinopodophyllum hexandrum   Opsanus beta   Mammut americanum   Vibrio alginolyticus   Sus scrofa   Acinetobacter baumannii ATCC 17978   Vigna mungo   Acidipropionibacterium acidipropionici   Caenorhabditis elegans   Olavius algarvensis spirochete endosymbiont   Chitinophaga pinensis   Ceratopteris richardii   Rhizophagus irregularis   Trypanosoma brucei brucei   Listeria monocytogenes EGD-e   Coffea eugenioides   Emiliania huxleyi   Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088   environmental samples   Hippophae rhamnoides   Physalis angulata   Synechocystis sp. PCC 6803   Trichoplax sp. H2   Piper nigrum   Elizabethkingia anophelis   Helicobacter pylori J99   Nicotiana repanda   Conus geographus   Fomitopsis pinicola   Bothrops brazili   Tortispora caseinolytica   Streptococcus pyogenes MGAS5005   rat gut metagenome   Kluyveromyces marxianus   Ixodes ricinus   Streptococcus suis   Neomegalonema perideroedes   sediment metagenome   Stigmatella aurantiaca DW4/3-1   Deinococcus radiodurans R1   Tilletia controversa   Rhinocerotidae   Bacillus cereus ATCC 14579   Paracoccus denitrificans PD1222   Crocosphaera subtropica ATCC 51142   Cucurbita maxima   Rhizobium leguminosarum bv. viciae 3841   Cairina moschata   Fragaria x ananassa   Veillonella parvula DSM 2008   Takifugu fasciatus   Colobanthus quitensis   Nicotiana noctiflora   Oryzias latipes   Neptuniibacter caesariensis   Mollivirus sibericum   Giardia sp.   Olavius algarvensis Delta 4 endosymbiont   Lens culinaris   Corynebacterium ulcerans bv. belfanti   Mycoplasma pneumoniae 19294   Rupicapra rupicapra   Candidatus Paraburkholderia kirkii   Camponotus floridanus   Entamoeba histolytica HM-1:IMSS-A   Tetrastichus   Pinus radiata   Anaerococcus hydrogenalis DSM 7454   Citeromyces matritensis   Brachypodium distachyon   Dendrobium sp. XMW-2002-13   Panine betaherpesvirus 2   Yersinia pestis KIM D27   Plasmodium yoelii yoelii   Colon   Ganoderma lingzhi   Viola tricolor subsp. tricolor   Nelumbo nucifera subsp. nucifera   Acaryochloris marina MBIC11017   Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10   Mentha spicata   Arbacia punctulata   Octopodiformes   Thalassiosira pseudonana CCMP1335   Pseudoalteromonas flavipulchra NCIMB 2033 = ATCC BAA-314   Vitis vinifera   Pogostemon cablin   Rhizobium leguminosarum bv. viciae Vc2   Trametes versicolor   Bos taurus   Microcystis aeruginosa PCC 7806   Mus musculus musculus x Mus musculus castaneus   Acinetobacter baumannii D1279779   uncultured bacterium   Prorocentrum donghaiense   Synechococcus sp. PCC 7002   Legionella pneumophila str. Paris   Algoriphagus marincola HL-49   Phaseolus vulgaris   Mytilus galloprovincialis   Frankia coriariae   Vitis hybrid cultivar   Labeo rohita   Cucumber mosaic virus   Methanothermococcus thermolithotrophicus DSM 2095   Galleria mellonella   Potentilla saundersiana   [Candida] glabrata   Sordaria macrospora k-hell   Coprococcus eutactus   Influenza A virus (A/New Caledonia/20-JY2/1999(H1N1))   Haemonchus contortus   Epstein-barr virus strain p3hr-1   Cyclotella cryptica   Pteropus rodricensis   Aedes aegypti aegypti   Cancer   Nostoc sp. PCC 7120 = FACHB-418   Pleuromamma xiphias   Human herpesvirus 2 strain 186   [Candida] auris   Aspergillus fumigatus CEA10   Planctopirus limnophila DSM 3776   Capsicum annuum var. annuum   Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841   Candidatus Accumulibacter phosphatis   Cryptochiton stelleri   Zalophus californianus   Gossypium robinsonii   Picea abies   Oenothera glazioviana   Clostridioides difficile 050-P50-2011   Bifidobacterium kashiwanohense PV20-2   Chlamydia trachomatis D/UW-3/CX   Mycobacterium tuberculosis SP7   Tannerella forsythia   Aspergillus niger NRRL3   Medicago truncatula var. truncatula   Quercus suber   Odontotaenius disjunctus   Acinetobacter baumannii ACICU   Tarenaya hassleriana   Paucilactobacillus suebicus   Rattus norvegicus   Ruminiclostridium cellulolyticum H10   Pseudomonas putida BIRD-1   Saccharomyces mikatae IFO 1815   Mycobacterium tuberculosis variant bovis str. Ravenel   Pachycladon fastigiatum   Mycobacterium tuberculosis variant bovis BCG str. Moreau RDJ   Leishmania infantum   Nicotiana langsdorffii   Trypanosoma cruzi strain Esmeraldo   Quercus robur   Roseburia intestinalis L1-82   Ciona intestinalis   Bacillus thuringiensis   Salmonella enterica subsp. enterica serovar Typhimurium str. SDT1291   Mycobacterium tuberculosis H37Rv   Pachysolen tannophilus   Knufia petricola   Eucalyptus spp. mixed library   Mycoplasma suis KI3806   Mycobacterium tuberculosis KZN 1435   Ursus deningeri   Bacillus cereus AH187   Antidorcas marsupialis   Nilaparvata lugens   Sulfolobus acidocaldarius   Cryptosporidium andersoni   Gulo gulo   Bacillus thuringiensis serovar kurstaki str. HD73   Rhizoctonia solani AG-8 WAC10335   Rickettsia slovaca 13-B   Cowpox virus (Brighton Red)   Leishmania infantum JPCM5   Taenia solium   Nepenthes x hookeriana   Leishmania guyanensis species complex   Periplaneta americana   Acinetobacter nosocomialis   Onchocerca lupi   Corynebacterium glutamicum   Naja sagittifera   Penicilliopsis zonata   Fraxinus nigra   Amphibalanus amphitrite   Sulfobacillus thermosulfidooxidans   Lutra lutra   Tenebrio molitor   Murine leukemia virus isolates   Burkholderia pseudomallei 1026b   Mycoplasma pneumoniae   Vibrio cholerae O1 biovar El Tor str. N16961   Prototheca zopfii   Fusarium oxysporum f. sp. cucumerinum   Candidatus Glomeribacter   Halomonas sp.   Vitis   Streptococcus dysgalactiae subsp. equisimilis SK1249   Stenotrophomonas rhizophila   Pomacea canaliculata   Acipenser transmontanus   Triaenophorus crassus   Dengue virus   Trypanosoma brucei brucei TREU927   Cancer irroratus   Escherichia coli O157:H7 str. EDL933   Prochlorococcus marinus str. MIT 9312   Naja mandalayensis   Syntrophus aciditrophicus   Metarhizium robertsii   Afrohybanthus enneaspermus   Catalpa fargesii   Cupriavidus basilensis   Paenibacillus pabuli   hybrid   Hydra vulgaris   Legionella pneumophila   Malassezia furfur   Acipenser baerii x Acipenser schrenckii   Acetomicrobium mobile   Qipengyuania flava   Lingula anatina   Pinctada maxima   Schmidtea mediterranea   Bordetella pertussis Tohama I   Ustilago maydis virus P4   Ricinus communis   Chara australis   Paramecium tetraurelia   Thalassiosira oceanica   Tuber aestivum   Escherichia coli BL21(DE3)   Aedes aegypti   Pseudomonas sp.   Amycolatopsis   Cucumis sativus   Leishmania braziliensis   Cryptococcus neoformans var. grubii VNI   Wolbachia pipientis wMelCS   Clostridioides difficile   Marchantia polymorpha subsp. ruderalis   Aspergillus fumigatus Af293   Sphingobium chlorophenolicum   Brucella abortus S19   Plasmodium sp. pBT9   Euglena gracilis   Panthera tigris   Aspergillus fumigatus var. fumigatus   Didelphis aurita   Staphylococcus sp. KDM4   Orbicella annularis   Euprymna scolopes   Streptococcus thermophilus LMD-9   Agrostis stolonifera   Acinetobacter baylyi ADP1   Latrodectus hesperus   Desulforapulum autotrophicum HRM2   Pseudomonas fluorescens SBW25   Gammarus pulex   Leishmania donovani   Phytophthora pisi   Burkholderia sp. 2332   Populus cathayana   Vibrio harveyi   Acinetobacter baumannii   Bison   Chaetoceros sp.   environmental samples   Borreliella burgdorferi B31   Rhizorhabdus wittichii   Pyrococcus furiosus   Pisolithus tinctorius Marx 270   Cyanophora paradoxa   Mengo virus   West Nile virus   Influenza A virus (H1N1)   Gnathostoma spinigerum   Solidesulfovibrio magneticus RS-1   Breviatea   Listeria monocytogenes HCC23   Penaeus vannamei   Bubalus bubalis   Candida dubliniensis CD36   Eucalyptus globulus   Trichechus manatus   Propionibacterium freudenreichii   Cloning vector pEGFP-C1   Tremarctos ornatus   Tropilaelaps mercedesae   Cervus nippon hortulorum   Carnobacterium divergens   Influenza A virus (A/Viet Nam/1203/2004(H5N1))   Ebolavirus   Vitis riparia   Yarrowia lipolytica   Vertebrata   Rhodobacter capsulatus SB 1003   Burkholderia sp. Bk   Komagataella pastoris   Staphylococcus xylosus   Bifidobacterium longum NCC2705   Morchella importuna   Myzus persicae   Pseudomonas ogarae   Picea likiangensis var. rubescens   Acinetobacter calcoaceticus/baumannii complex   Xanthomonas campestris pv. campestris str. B100   Hordeum vulgare   Cricetulus griseus   Spinacia oleracea   Thermodesulfobium acidiphilum   Entamoeba histolytica   Canis lupus familiaris   Streptococcus pneumoniae   Nicotiana tabacum   Pseudomonas syringae   Chinchilla lanigera   Chaetodon lunulatus   Architeuthis dux   Nostoc flagelliforme   Helicobacter pylori E48   Aspergillus flavus   Streptococcus agalactiae   Calicophoron daubneyi   Oryza sativa Indica Group   Tupavirus   biofilm metagenome   Aspergillus nidulans TN02A3   Podospora   Angiostrongylus vasorum   Rickettsia conorii str. Malish 7   Gammarus fossarum   Anopheles stephensi   Leishmania donovani BPK282A1   Staphylococcus aureus subsp. aureus MRSA252   Ictalurus punctatus   Cereibacter sphaeroides 2.4.1   Oreochromis niloticus niloticus   Desmodus rotundus   Cyanobacterium stanieri   Plasmodium falciparum Dd2   Liberibacter endosymbiont of Diaphorina citri   Aspergillus   Plasmodium falciparum 3D7   Aspergillus nidulans   Cleome angustifolia   Vaccinia virus WR   Plasmodium berghei ANKA   Sphingobium sp. AM   Panicum virgatum   Staphylococcus aureus subsp. aureus NN50   Methanoculleus sp. 10   Saccharomyces cerevisiae W303   Beauveria bassiana ARSEF 2860   Plasmodium vivax   Citrobacter freundii   Cricetulus barabensis   Solenopsis invicta   Cryptococcus neoformans var. grubii H99W   Venturia pyrina   Bradyrhizobium   Staphylococcus aureus subsp. aureus NCTC 8325   Klebsiella pneumoniae UHKPC27   Chlorella sp. SAG 211-18   Bombus terrestris   Synechococcus sp. WH 7803   Perkinsus marinus   Diplonema papillatum   Escherichia phage T7   Apostichopus japonicus   Marseillevirus   Mycolicibacterium smegmatis   Crocuta   Sinorhizobium meliloti BL225C   Bos indicus   Aspergillus nidulans FGSC A4   Synechocystis sp. PCC 6803 substr. GT-S   Acanthoscurria geniculata   Entamoeba histolytica HM-1:IMSS-B   Faecalibacterium prausnitzii SL3/3   Dichocoenia stokesii   Ustilago maydis   Butyrivibrio fibrisolvens   Luteibacter   Pyrus x bretschneideri   Crustacea   Aspergillus niger ATCC 13496   Pseudomonas taiwanensis   Nicotiana africana   Mycoplasma gallisepticum S6   Faustovirus   Aquilaria sinensis   Burkholderia cenocepacia K56-2Valvano   Mycobacterium tuberculosis SP22   Severe acute respiratory syndrome coronavirus 2   Herbaspirillum seropedicae   Stappia stellulata DSM 5886   Streptococcus suis SC84   Klebsiella pneumoniae 342   Tetranychus urticae   Buchnera aphidicola (Acyrthosiphon pisum)   Camelus dromedarius   Nitrospinae   Alteromonadales   Tursiops truncatus   Populus tremula   Haliotis discus hannai   Aspergillus versicolor   Rhizopus delemar   Xanthomonas oryzae pv. oryzae PXO99A   Staphylococcus sp. 1   Acinetobacter baumannii AB307-0294   Echis carinatus   Nosema apis   Plasmodium knowlesi strain H   Bacillus velezensis   Stegodyphus mimosarum   Amphora coffeiformis   Nepenthes rafflesiana   Streptococcus pneumoniae TIGR4   Pseudomonas aeruginosa PA14   Nicotiana benavidesii   HIV-1 M:B_HXB2R   Streptomyces sp. MC1   Prochlorococcus marinus subsp. marinus str. CCMP1375   Camponotus fellah   Candida albicans SC5314   Cytomegalovirus   Avena strigosa   Nephila clavipes   Staphylococcus aureus subsp. aureus str. Newman   Influenza A virus   Pongo pygmaeus   Rangifer tarandus   Tapirus terrestris   Mrakia psychrophila   Methanosarcina mazei Go1   Ustilaginoidea virens   Argulus foliaceus   Staphylococcus aureus subsp. aureus USA300   Streptococcus pyogenes M1 GAS   Nicotiana forgetiana   Gorilla gorilla gorilla   Tequatrovirus T4   Ictalurid herpesvirus 1   Echinococcus ortleppi   Staphylococcus aureus   Ipomoea batatas   Epichloe festucae E2368   Lentibacter algarum   Malaclemys terrapin   Nicotiana rustica   Culex pipiens pipiens   Mycobacterium tuberculosis C StG4006   Trypanosoma brucei   Palaemonetes sp. common grass shrimp associated circular virus   Sitobion avenae   Bacteroides fragilis 638R   Millerozyma acaciae   Campylobacter concisus 13826   Saccharum sp.   Moorella thermoacetica ATCC 39073   Crunoecia irrorata   Pseudomonas putida KT2440   Lacticaseibacillus rhamnosus GG   Dehalobacter restrictus   Toxoplasma gondii type III   Micrococcus luteus   Biomphalaria glabrata   Methylocystis sp. SC2   Chlamydia trachomatis   Coprothermobacter   Macaca nemestrina  

TISSUE(S): Blood Plasma

SUBMITTER: Elizabeth Flynn  

LAB HEAD: Merry L Lindsey, Ph.D.

PROVIDER: PXD009870 | Pride | 2018-08-30

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
JHS_10_MI_no_HF_Male.pep.xml Pepxml
JHS_10_MI_no_HF_Male.prot.xml Xml
JHS_10_MI_no_HF_Male.raw Raw
JHS_11_MI_no_HF_Male.pep.xml Pepxml
JHS_11_MI_no_HF_Male.prot.xml Xml
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Publications

LXR/RXR signaling and neutrophil phenotype following myocardial infarction classify sex differences in remodeling.

DeLeon-Pennell Kristine Y KY   Mouton Alan J AJ   Ero Osasere K OK   Ma Yonggang Y   Padmanabhan Iyer Rugmani R   Flynn Elizabeth R ER   Espinoza Ingrid I   Musani Solomon K SK   Vasan Ramachandran S RS   Hall Michael E ME   Fox Ervin R ER   Lindsey Merry L ML  

Basic research in cardiology 20180821 5


Sex differences in heart failure development following myocardial infarction (MI) are not fully understood. We hypothesized that differential MI signaling could explain variations in outcomes. Analysis of the mouse heart attack research tool 1.0 (422 mice; young = 5.4 ± 0.1; old = 23.3 ± 0.1 months of age) was used to dissect MI signaling pathways, which was validated in a new cohort of mice (4.8 ± 0.2 months of age); and substantiated in humans. Plasma collected at visit 2 from the MI subset of  ...[more]

Publication: 1/2

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