Proteomics

Dataset Information

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The Atlantic cod MHC I compartment has the properties needed for cross-presentation in the absence of MHC II


ABSTRACT: Atlantic cod and codfish (Gadiformes) lack major histocompatibility complex (MHC) class II and CD4+ T cells, components of the immune system that are central to autoimmune diseases and to fight bacterial infections. In mammalians, the MHC class II molecules are expressed in cells of the immune system like B cells, monocytes, macrophages and dendritic cells. Here, the MHC class II molecules control the specificity of the immune response by presenting fragments from proteins that are degraded in the endosomal pathway to CD4+ T cells. In the absence of MHC class II, such as in bare lymphocyte syndrome type II patients and in MHC class II-deficient mice, the immune system fails to respond properly to infections, ultimately leading to life-threatening conditions. It remains a mystery then, how codfish lacking the MHC class II pathway, can efficiently fight diseases. By studying Atlantic cod MHC I in cod cell lines and primary cells, we aim to search for and determine the function of new players and pathways that might compensate for the absence of the MHC class II pathway.

INSTRUMENT(S): Bruker software

ORGANISM(S): Gadus Morhua (atlantic Cod)

SUBMITTER: Manuel Ramirez  

LAB HEAD: Cinzia Anita Maria Progida

PROVIDER: PXD050180 | Pride | 2025-05-13

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
MR_221209_Progida_exp1_ctrl.d.7z Other
MR_221209_Progida_exp1_sample.d.7z Other
MR_230217_Bjornestad_exp2_ctrl.d.7z Other
MR_230217_Bjornestad_exp2_sample.d.7z Other
MR_Prodiga_exp3_ctrl.d.7z Other
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Publications

The Atlantic Cod MHC I compartment has the properties needed for cross-presentation in the absence of MHC II.

Bjørnestad Synne Arstad SA   Solbakken Monica Hongrø MH   Krokene Pia P   Thiede Bernd B   Hylland Ketil K   Jakobsen Kjetill S KS   Jentoft Sissel S   Bakke Oddmund O   Progida Cinzia C  

Scientific reports 20241025 1


Atlantic cod has a peculiar immune system, characterized by the loss of Major Histocompatibility Complex (MHC) class II pathway, and an extreme expansion of the MHC class I gene repertoire. This has led to the hypothesis that some of the MHC I variants have replaced MHC II by presenting exogenous-peptides in a process similar to cross-presentation. In mammals, MHC I loads endogenous antigens in the endoplasmic reticulum, but we recently found that different Atlantic cod MHC I gene variants traff  ...[more]

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