Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Seawater metagenome

ABSTRACT: Nitrification in North Pacific Ocean

PROVIDER: PRJDB14196 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR399905_1.fastq.gz	Fastqsanger.gz
	DRR399905_2.fastq.gz	Fastqsanger.gz
	DRR399906_1.fastq.gz	Fastqsanger.gz
	DRR399906_2.fastq.gz	Fastqsanger.gz
	DRR399907_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

The ProteOMZ Expedition: Investigating Life Without Oxygen in the Pacific Ocean

Project description:Untargeted proteomics from a 5,000 km+ transect across the central Pacific Ocean from Hawaii to Tahiti. The expedition crossed multiple biogeochemical provinces, inlcuding the oligotrophic North Pacific Subtropical Gyre, the extremety of the Eastern Tropical North Pacific Oxygen Deficient Zone, and the relatively productive equatorial region associated with upwelling. This dataset focuses on the microbial fraction (0.2-3.0 micrometer filter size) and the microbial community dynamics across these biogeochemical provinces, from the surface oceance to the mesopelagic (1,250 m depth maximum).

2022-08-31 | PXD030684 | Pride

seawater metagenome

Project description:Seawater microbial communities from North Pacific Ocean, California, USA - SR7_200 metagenome

| PRJNA1316770 | ENA

seawater metagenome

Project description:Seawater microbial communities from North Pacific Ocean, California, USA - SR7_460 metagenome

| PRJNA1316016 | ENA

Trichodesmium metaproteome samples across three ocean regions

Project description:The diazotroph Trichodesmium is an important contributor to marine dinitrogen (N2) fixation, supplying so-called new N to phytoplankton in typically N-limited ocean regions. Identifying how iron (Fe) and phosphorus (P) influence Trichodesmium activity and biogeography is an ongoing area of study, where predicting patterns of resource stress is complicated in part by the uncertain bioavailability of organically complexed Fe and P. Here, a comparison of 26 metaproteomes from picked Trichodesmium colonies identified significantly different patterns between three ocean regions: the western tropical South Pacific, the western North Atlantic, and the North Pacific Subtropical Gyre. Trichodesmium metaproteomes across these regions significantly differed in KEGG submodule signals, and vector fitting showed that dissolved Fe, phosphate, and temperature significantly correlated with regional proteome patterns. Populations in the western tropical South Pacific appeared to modulate their proteomes in response to both Fe and P stress, including a comparatively low relative abundance of the N2 fixation marker protein, NifH. Significant increases in the relative abundance of both Fe and P stress marker proteins previously validated in culture studies suggested that Trichodesmium populations in the western North Atlantic and North Pacific were P-stressed and Fe-stressed, respectively. These patterns recapitulate established regional serial and co-limitation patterns of resource stress on phytoplankton communities. Evaluating community stress patterns may therefore predict resource controls on diazotroph biogeography. These data highlight how Trichodesmium modulates its metabolism in the field and provide an opportunity to more accurately constrain controls on Trichodesmium biogeography and N2 fixation.

2025-06-17 | PXD057942 | Pride

Eastern Tropical North Pacific Seawater

Project description:Eastern Tropical North Pacific Ocean 2018

| PRJNA863324 | ENA

seawater metagenome

Project description:Seawater microbial communities from Station ALOHA in the North Pacific Subtropical Gyre (NPSG), Pacific Ocean - DictyV_052515_NPSG metagenome

| PRJNA1340174 | ENA

seawater metagenome

Project description:Seawater microbial communities from Station ALOHA in the North Pacific Subtropical Gyre (NPSG), Pacific Ocean - ChrysoV_050419_NPSG metagenome

| PRJNA1275043 | ENA

seawater metagenome

Project description:Seawater microbial communities from eastern tropical North Pacific Ocean - AMALJGI-DNA-13 metagenome

| PRJNA653156 | ENA

seawater metagenome

Project description:Seawater microbial communities from eastern tropical North Pacific Ocean - AMALJGI-DNA-14 metagenome

| PRJNA653157 | ENA

seawater metagenome

Project description:Seawater microbial communities from eastern tropical North Pacific Ocean - AMALJGI-DNA-15 metagenome

| PRJNA653158 | ENA