Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bovine herpesvirus 4 (isolate V. test)

ABSTRACT: Complete genome sequence of bovine herpesvirus type 4 isolated in Japan

PROVIDER: PRJDB15078 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR428546_1.fastq.gz	Fastqsanger.gz
	DRR428546_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Bovine alphaherpesvirus 1 isolate:BHV SHJS

Project description:Bovine herpesvirus type 1

| PRJNA855453 | ENA

Bovine adenovirus 2 strain:KY19-1

Project description:Complete genome sequence of bovine adenovirus type 2 isolated in Japan

| PRJDB11330 | ENA

Experimental challenge with bovine herpesvirus 1 in dairy calves: cranial lung lobe mRNA transcriptome response

Project description:Bovine Herpesvirus 1 (BoHV1) is a leading cause of Bovine Respiratory Disease (BRD) in young calves, which is responsible for substantial morbidity and mortality. Therefore, the objective of the current study was to elucidate the cranial lung lobe mRNA transcriptomic response to an experimental challenge with BoHV1, in dairy calves. Holstein-Friesian calves were either challenged by intranasal atomisation with BoHV1 virus (6.3 x 10^7/mL x 1.35mL) (n=12) or mock challenged with sterile phosphate buffered saline (n=6). Clinical signs were scored daily until euthanasia at day 6 post-challenge. Total RNA was extracted and sequenced from cranial lung lobe tissue (lesioned and healthy) (150 bp paired-end). Sequence reads were aligned to the ARS-UCD1.2 bovine reference genome and differential gene expression analysis was performed using EdgeR. There were 334 differentially expressed genes in the healthy cranial lobe tissue, between BoHV1 challenged and control calves, and there were 67 differentially expressed genes

2025-02-21 | GSE153429 | GEO

Examination of the pharyngeal tonsil transcriptome response to Bovine herpesvirus 1 (BoHV-1) infection in dairy calves

Project description:Bovine Herpesvirus 1 (BoHV1) is a leading cause of Bovine Respiratory Disease (BRD) in young calves, which is responsible for substantial morbidity and mortality. Therefore, the objective of the current study was to elucidate the mRNA transcriptomic response in pharyngeal tonsil tissue to an experimental challenge with BoHV1, in dairy calves. Holstein-Friesian calves were either challenged by intranasal atomisation with BoHV1 virus (6.3 x 10^7/mL x 1.35mL) (n=12) or mock challenged with sterile phosphate buffered saline (n=6). Clinical signs were scored daily until euthanasia at day 6 post-challenge. Total RNA was extracted and sequenced from pharyngeal tonsil (100 bp paired-end). Sequence reads were aligned to the ARS-UCD1.2 bovine reference genome and differential gene expression analysis was performed using EdgeR. Anlysis uncovered a total of 1833 differentially expressed genes (p < 0.05, FDR < 0.1, fold change > 2) between the BoHV-1 challenged and control calves.

2025-02-20 | GSE227344 | GEO

Experimental challenge with bovine herpesvirus 1 in dairy calves: bronchial lymph node mRNA transcriptome response

Project description:Bovine Herpesvirus 1 (BoHV1) is a leading cause of Bovine Respiratory Disease (BRD) in young calves, which is responsible for substantial morbidity and mortality. Therefore, the objective of the current study was to elucidate the bronchial lymph node mRNA transcriptomic response to an experimental challenge with BoHV1, in dairy calves. Holstein-Friesian calves were either challenged by intranasal atomisation with BoHV1 virus (6.3 x 10^7/mL x 1.35mL) (n=12) or mock challenged with sterile phosphate buffered saline (n=6). Clinical signs were scored daily until euthanasia at day 6 post-challenge. Total RNA was extracted and sequenced from bronchial lymph node tissue (150 bp paired-end). Sequence reads were aligned to the ARS-UCD1.2 bovine reference genome and differential gene expression analysis was performed using EdgeR. An MDS plot displayed an obvious separation between BoHV1 challenged and control calves based on bronchial lymph node gene expression changes. There were 337 differentially expressed (DE) genes (p < 0.05, FDR < 0.1, fold change > 2) between the BoHV1challenged and control calves.

2025-02-21 | GSE153242 | GEO

Transcriptome and Proteomic Analysis Reveals Up-Regulation of Innate Immunity Related Genes Expression in Caprine Herpesvirus 1 Infected Madin Darby Bovine Kidney Cells

Project description:In order to further understanding the replication and pathogenesis of Caprine herpesvirus 1 (CpHV-1) and virus-host interactions. In this study, the proteomics of CpHV-1 infected Madin Darby bovine kidney (MDBK) cells was explored by using iTRAQ-LC-MS/MS technology.

2022-02-17 | PXD026014 | Pride

Examination of the mediastinal lymph node transcriptome response to Bovine herpesvirus 1 (BoHV-1) infection in dairy calves

Project description:Bovine Herpesvirus 1 (BoHV1) is a leading cause of Bovine Respiratory Disease (BRD) in young calves, which is responsible for substantial morbidity and mortality. Therefore, the objective of the current study was to elucidate the mRNA transcriptomic response in mediastinal lymph node tissue to an experimental challenge with BoHV1, in dairy calves. Holstein-Friesian calves were either challenged by intranasal atomisation with BoHV1 virus (6.3 x 10^7/mL x 1.35mL) (n=12) or mock challenged with sterile phosphate buffered saline (n=6). Clinical signs were scored daily until euthanasia at day 6 post-challenge. Total RNA was extracted and sequenced from mediastinal lymph node tissue (100 bp paired-end). Sequence reads were aligned to the ARS-UCD1.2 bovine reference genome and differential gene expression analysis was performed using EdgeR. Anlysis uncovered a total of 81 differentially expressed genes (p < 0.05, FDR < 0.1, fold change > 2) between the BoHV-1 challenged and control calves.

2025-02-20 | GSE229115 | GEO

Equid herpesvirus 8

Project description:Equid herpesvirus 8: complete genome sequence and association with abortion in mares

| PRJEB24126 | ENA

Bovine adenovirus 7 strain:Fukuroi

Project description:Complete genome sequence of bovine adenovirus type 7 strain Fukuroi

| PRJDB10826 | ENA

Lates calcarifer herpesvirus

Project description:Lates calcarifer Herpesvirus genome

| PRJNA1047000 | ENA