Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Chaenogobius

ABSTRACT: Genomic landscape of introgression in a coastal marine goby, Chaenogobius annularis

PROVIDER: PRJDB16162 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR489903_1.fastq.gz	Fastqsanger.gz
	DRR489903_2.fastq.gz	Fastqsanger.gz
	DRR489904_1.fastq.gz	Fastqsanger.gz
	DRR489904_2.fastq.gz	Fastqsanger.gz
	DRR489905_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 421

Similar Datasets

Chaenogobius annularis

Project description:Chaenogobius annularis overview

| PRJNA846422 | ENA

Chaenogobius annularis

Project description:Population genomics of Chaenogobius annularis

| PRJDB7125 | ENA

Chaenogobius gulosus

Project description:Commonality and differences in phylogeographic structure of two sympatric sister species of goby with high ecological similarity

| PRJDB19096 | ENA

Gene expression response to copper toxicity between coastal and open ocean strains of marine Synechococcus

2009-07-01 | GSE13910 | GEO

Effect of acute embryonic exposures to tris(4-chlorophenyl)methane and tris(4-chlorophenyl)methanol in the zebrafish

Project description:Tris(4-chlorophenyl)methane (TCPM) and tris(4-chlorophenyl)methanol (TCPMOH) are two marine pollutants of emerging concern, found in marine mammals and coastal bird populations. Here, we assess the response to these compounds due to acute exposures in zebrafish embryos (from 96-100 hours post fertilization).

2021-09-09 | GSE165920 | GEO

Effect of developmental (24-100 hpf) embryonic exposures to tris(4-chlorophenyl)methane and tris(4-chlorophenyl)methanol in the zebrafish

Project description:Tris(4-chlorophenyl)methane (TCPM) and tris(4-chlorophenyl)methanol (TCPMOH) are two marine pollutants of emerging concern, found in marine mammals and coastal bird populations. Here, we assess the response to these compounds due to developmental (24-100 hourrs post fertilization) exposures in zebrafish embryos

2022-12-31 | GSE198106 | GEO

Gene expression response to copper toxicity between coastal and open ocean strains of marine Synechococcus

Project description:Marine cyanobacteria are thought to be the most sensitive of the phytoplankton groups to copper toxicity, yet little is known of the transcriptional response of marine Synechococcus to copper shock. Global transcriptional response to two levels of copper shock was assayed in both a coastal and an open ocean strain of marine Synechococcus using whole genome expression microarrays. Both strains showed an osmoregulatory-like response, perhaps as a result of increasing membrane permeability. This could have implications for marine carbon cycling if copper shock leads to dissolved organic carbon leakage in Synechococcus. The two strains additionally showed a reduction in photosynthetic gene transcripts. Contrastingly, the open ocean strain showed a typical stress response whereas the coastal strain exhibited a more specific oxidative or heavy metal type response. In addition, the coastal strain activated more regulatory elements and transporters, many of which are not conserved in other marine Synechococcus strains and may have been acquired by horizontal gene transfer. Thus, tolerance to copper shock in some marine Synechococcus may in part be a result of an increased ability to sense and respond in a more specialized manner. In this series four conditions have been analyzed. These are moderate copper shock for Synechococcus sp. WH8102 and CC9311 (pCu 11.1 and pCu 10.1, respectively), and high copper shock for WH8102 and CC9311 (pCu 10.1 and pCu 9.1, respectively). For each slide, an experimental RNA sample was labeled with Cy3 or Cy5 and was hybridized with a reference RNA from a non-copper-shocked sample labeled with the other Cy dye. There are six or eight slides per condition, each with two biological replicates. There are three or four technical replicates for each biological replicate including at least one flip-dye comparison. Each slide contains six replicate spots per gene.

2010-05-17 | E-GEOD-13910 | biostudies-arrayexpress

fDipAnn1

Project description:Diplodus annularis, genomic assembly, fDipAnn1

| PRJEB101347 | ENA

Skeletonema marinoi LC-MS/MS analysis

Project description:Rising atmospheric CO2 concentrations are leading to ocean acidification, altering the inorganic carbon buffer system with consequences for marine organisms. Here we applied RNA-seq and iTRAQ quantification to investigate the potential impacts of ocean acidification on the temperate coastal marine diatom Skeletonema marinoi.

2020-12-09 | PXD021416 | Pride

fDipAnn1

Project description:Diplodus annularis, genomic and transcriptomic data

| PRJEB101346 | ENA