Project description:This dataset is part of ERC funded HumEn project (http://www.hum-en.eu/). This dataset relates to standardization of genome wide DNase 1 hypersensitivity methods in the differentiation system developed in HumEn project.
Project description:As part of the ENCODE consortium project (NIH, NHGRI), we conducted genome-wide location analysis for various transcription factors in various cell types. The long-term goal of this project is to determine the function of each DNA nucleotide in the genome. Measurement of transcription factor binding events is an important part of this effort. Here we measure genome-wide binding events for a variety of important transcriptional regulators. Keywords: ChIP-chip
Project description:These methylation data generated using EM-seq for all the NAM lines (as a part of the genome assembly project of NAM by the NAM Consortium Group). B73=project ID PRJEB32225/ERP114875; B73Ab10=project ID PRJEB35367/ERP118403; the rest of the NAMs=project ID PRJEB31061/ERP113571
Project description:<p>Neonatal mortality is mostly due to a reduced piglet maturity. An essential question for adaptation to extra-uterine environment lies in the optimization of the crosstalk between maternal and fetal genomes for a distribution of resources that allows fetuses to express healthier phenotypes at birth. The CO-LOcATION project proposes an integrative biology approach combining transcriptomics, metabolomics, lipidomics and maturity phenotypes to answer this crucial question for both research and pig production sustainability. The project will use samples from the former ANR PORCINET project, which produced pure genotypes and reciprocal crossbreed genotypes with contrasted robustness at birth. The complexity of the maturity phenotypes will be addressed by studying the trade-off between growth and survival with a focus on endometrial-placental interactions using whole-genome approaches.</p>
