Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bovine metagenome

ABSTRACT: 2013 Summer Nebraska Cattle 16S

PROVIDER: PRJDB4262 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR053316.fastq.gz	Fastqsanger.gz
	DRR053317.fastq.gz	Fastqsanger.gz
	DRR053318.fastq.gz	Fastqsanger.gz
	DRR053319.fastq.gz	Fastqsanger.gz
	DRR053320.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 192

Similar Datasets

bovine gut metagenome

Project description:2013 Summer Nebraska Cattle Fecal 16S Raw sequence reads

| PRJNA309245 | ENA

The nasopharyngeal microbiota of cattle with bovine respiratory disease

Project description:The nasopharyngeal microbiota of healthy cattle vs. cattle diagnosed with BRD in a commercial feedlot setting was compared using a high-density 16S rRNA microarray (Phylochip). Nasopharyngeal samples were taken from both groups of animals (n=5) at feedlot entry (day 0) and >60 days later.

2015-06-21 | E-MTAB-3430 | biostudies-arrayexpress

Seasonal Heat Stress Effects on Transcriptomic Profiles and DNA Methylation of Bovine Oocytes

Project description:Heat stress affects oocyte developmental competence and is a major cause of reduced fertility in heat stressed cattle. Negative effects of heat stress on the oocyte have been observed at morphological, biochemical and developmental levels. However, the mechanisms by which heat stress affects the oocyte at the transcriptional and epigenetic levels remain to be further elucidated. Here we aimed to investigate the effect of heat stress on oocyte quality, transcriptomic profiles and DNA methylation of oocytes collected through the transition from spring to summer under Louisiana conditions. Summer heat resulted in a lower number of high quality oocytes obtained compared to the spring season. There was no difference in maturation rates of oocytes collected during spring as compared to summer. RNA sequencing analysis showed that a total of 212 and 93 genes were differentially expressed as a result of heat stress at the GV and MII oocytes, respectively. Five common genes (E2F8, GATAD2B, BHLHE41, FBXO44, and RAB39B) were significantly affected by heat in both GV and MII oocytes. A number of pathways were also influenced by heat stress including glucocorticoid biosynthesis, apoptosis signaling, and HIPPO signaling in GV oocytes, and Oct4 pluripotency, Wnt/beta-catenin signaling, and melatonin degradation I in MII oocytes, respectively. In addition, fluorescent immunocytochemistry analysis showed no difference in global levels of DNA methylation and DNA hydroxymethylation at either the GV or MII stage between spring and summer oocytes. The results of this study contribute to a better understanding of the effect of heat stress on the molecular mechanisms altered in bovine oocytes.

2021-04-27 | GSE166413 | GEO

bovine gut metagenome

Project description:16S rRNA sequencing reads from the GIT of feedlot cattle from 21 different feedlots

| PRJNA1207998 | ENA

bovine gut metagenome

Project description:Cattle feces Metagenome

| PRJNA309291 | ENA

bovine metagenome

Project description:respiratory tract and joint microbiota of cattle

| PRJNA788973 | ENA

bovine gut metagenome

Project description:intestinal bacterial flora of cattle