Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Solanum lycopersicum

ABSTRACT: Tomato RNA-seq analysis

PROVIDER: PRJDB5790 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR092895.fastq.gz	Fastqsanger.gz
	DRR092896.fastq.gz	Fastqsanger.gz
	DRR092897.fastq.gz	Fastqsanger.gz
	DRR092898.fastq.gz	Fastqsanger.gz
	DRR092899.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 27

Similar Datasets

Solanum lycopersicum Transcriptome or Gene expression

Project description:To characterize the PTI response of tomato and the effect of the delivery of a subset of effectors, we performed an RNA-seq analysis of tomato Rio Grande prf3 leaves challenged with either the flgII-28 peptide or the following bacterial strains: Agrobacterium tumefaciens GV2260, Pseudomonas fluorescens 55, Pseudomonas putida KT2440, Pseudomonas syringae pv. tomato (Pst) DC3000, Pst DC3000 deltahrcQ-U deltafliC and Pst DC3000 deltaavrPto deltaavrPtoB. NOTE: Samples in SRA were assigned the same sample accession. This is incorrect as there are different samples, hence âSource Nameâ was replaced with new values. Comment[ENA_SAMPLE] contains the original SRA sample accessions.

2013-08-21 | E-MTAB-4789 | biostudies-arrayexpress

Solanum lycopersicum

Project description:Tomato FM RNA-seq (PRJCA021907)

| PRJDB29936 | ENA

iSB09 and iCB elicit ABA-responsive gene expression in Solanum lycopersicum seedlings

Project description:To compare the genome-wide transcriptional effect of ABA and iSB09 in tomato plants, we performed RNA-seq analysis of mock-, 10 uM ABA- or 20 uM iSB09-treated plants. Differential gene expression analysis between mock- and ABA-treated or iSB09-treated seedlings was done with DESeq2 and genes with an absolute value of log2 fold change (log2FC) > 1 or (log2FC) < -1 and p-adjusted value (padj) < 0.05 were selected. iSB09 upregulated and downregulated genes represent a subset of the ABA-responsive genes, which reflects the activation of PYL1-like and PYL4-like ABA receptors in tomato seedlings. Additionally, to compare the genome-wide transcriptional effect of ABA and iCB in tomato plants, we performed RNA-seq analysis of mock-, 10 uM ABA- or 10 uM iCB-treated plants. Differential gene expression analysis between mock- and ABA-treated or iCB-treated seedlings was done with DESeq2 and genes with an absolute value of log2 fold change (log2FC) > 1 or (log2FC) < -1 and p-adjusted value (padj) < 0.05 were selected. iCB mimics ABA transcriptional response through activation of the three subfamilies of ABA receptors.

2024-07-22 | GSE256238 | GEO

Solanum lycopersicum

Project description:RNA-Seq of miR482b-overexpressing tomato

| PRJNA479930 | ENA

Solanum lycopersicum

Project description:Tomato MYC2 ChIP- and RNA-seq data

| PRJNA375842 | ENA

Solanum lycopersicum

Project description:RNA-seq analysis reveals the role of red light in resistance against Pseudomonas syringae pv. tomato DC3000 in tomato plants

| PRJNA270083 | ENA

High-throughput pyrosequencing of endogenous small RNAs from Solanum lycopersicum leaf and fruit

Project description:Comparison of the endogenous small RNA content of tomato leaves and fruits.

2008-08-22 | GSE12081 | GEO

Solanum lycopersicum

Project description:RNA-seq during adventitious rooting in tomato mars1 mutants

| PRJNA1289037 | ENA

RNA-seq of Solanum Lycopersicum and Solanum Pennellii parents and crosses up to the F4 generation

Project description:This study investigates changes in gene expression among 2 Tomato species and their hybrids. This was used to investigate changes in gene (small-RNA-Seq data in separate submission) and sRNA expression after hybridisation.

2022-04-25 | E-MTAB-10660 | biostudies-arrayexpress

Solanum lycopersicum

Project description:RNA seq analysis of pathogen-induced transcriptome changes in tomato plants overexpressing the Arabidopsis ELP4 gene

| PRJNA382680 | ENA