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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Solanum lycopersicum Transcriptome or Gene expression

ABSTRACT: To characterize the PTI response of tomato and the effect of the delivery of a subset of effectors, we performed an RNA-seq analysis of tomato Rio Grande prf3 leaves challenged with either the flgII-28 peptide or the following bacterial strains: Agrobacterium tumefaciens GV2260, Pseudomonas fluorescens 55, Pseudomonas putida KT2440, Pseudomonas syringae pv. tomato (Pst) DC3000, Pst DC3000 deltahrcQ-U deltafliC and Pst DC3000 deltaavrPto deltaavrPtoB. NOTE: Samples in SRA were assigned the same sample accession. This is incorrect as there are different samples, hence âSource Nameâ was replaced with new values. Comment[ENA_SAMPLE] contains the original SRA sample accessions.

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Solanum lycopersicum

SUBMITTER: Gregory Martin

PROVIDER: E-MTAB-4789 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Transcriptomics-based screen for genes induced by flagellin and repressed by pathogen effectors identifies a cell wall-associated kinase involved in plant immunity.

Rosli Hernan G HG Zheng Yi Y Pombo Marina A MA Zhong Silin S Bombarely Aureliano A Fei Zhangjun Z Collmer Alan A Martin Gregory B GB

Genome biology 20131220 12

<h4>Background</h4>Microbe-associated molecular patterns, such as those present in bacterial flagellin, are powerful inducers of the innate immune response in plants. Successful pathogens deliver virulence proteins, termed effectors, into the plant cell where they can interfere with the immune response and promote disease. Engineering the plant immune system to enhance disease resistance requires a thorough understanding of its components.<h4>Results</h4>We describe a high-throughput screen, usi ...[more]

PMID: 24359686

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