Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Human gut metagenome

ABSTRACT: Method assessment of fecal DNA extraction

PROVIDER: PRJDB6503 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR111526.fastq.gz	Fastqsanger.gz
	DRR111526_1.fastq.gz	Fastqsanger.gz
	DRR111526_2.fastq.gz	Fastqsanger.gz
	DRR111527.fastq.gz	Fastqsanger.gz
	DRR111527_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 90

Similar Datasets

feces metagenome

Project description:EFFECT OF DNA EXTRACTION METHOD IN GUT FUNGAL COMMUNITY ASSESSMENT

| PRJNA1074688 | ENA

human gut metagenome

Project description:An improved methodology to overcome key issues associated with the methods of human fecal metagenomic DNA extraction

| PRJNA294995 | ENA

human gut metagenome

Project description:An improved methodology to overcome key issues associated with the methods of human fecal metagenomic DNA extraction

| PRJNA295000 | ENA

human gut metagenome

Project description:Comparison of microbial DNA extraction methods for clinical applications

| PRJDB7617 | ENA

Assessment of fecal DNA extraction protocols for metagenomic study

Project description:Assessment of fecal DNA extraction protocols for metagenomic study

| PRJEB38036 | ENA

Temporal dynamics and metagenomics of phosphorothioate epigenomes in the human gut microbiome

Project description:Epigenetic regulation of gene expression and host defense is well established in microbial communities, with dozens of DNA modifications comprising the epigenomes of prokaryotes and bacteriophage. Phosphorothioation (PT) of DNA, in which a chemically-reactive sulfur atom replaces a non-bridging oxygen in the sugar-phosphate backbone, is catalyzed by dnd and ssp gene families widespread in bacteria and archaea. However, little is known about the role of PTs or other microbial epigenetic modifications in the human microbiome. Here we optimized and applied fecal DNA extraction, mass spectrometric, and metagenomics technologies to characterize the landscape and temporal dynamics of gut microbes possessing PT modifications.

2025-03-03 | PXD051389 | Pride

human gut metagenome

Project description:Novel sampling method optimized for fecal microbiota and metabolite preservation during storage

| PRJDB15798 | ENA

Human Stool Sample

Project description:DNA Extraction Method Comparatives For Human Stool Based Microbiome

| PRJNA693434 | ENA

human gut metagenome

Project description:Mucosal tissue and fecal DNA sampling. Metagenome

| PRJNA268515 | ENA

human gut metagenome

Project description:Human fecal DNA 16S rRNA amplicons 8F 518R