Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gentiana

ABSTRACT: RNA-seq data of petals in red gentian variety Showtime Starlet

PROVIDER: PRJDB9378 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR213807_1.fastq.gz	Fastqsanger.gz
	DRR213807_2.fastq.gz	Fastqsanger.gz
	DRR213808_1.fastq.gz	Fastqsanger.gz
	DRR213808_2.fastq.gz	Fastqsanger.gz
	DRR213809_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Gentiana triflora

Project description:RNA-seq data of petals and leaves in Gentiana triflora

| PRJDB9616 | ENA

E-MTAB-6740

Project description:RNA-Seq of seed dormancy in red rice

2020-01-28 | E-MTAB-6740 | ExpressionAtlas

E-GEOD-94457

Project description:RNA-seq data of Arabidopsis thaliana germination

2023-06-15 | E-GEOD-94457 | ExpressionAtlas

Production of Red Flower Rapeseed by Ectopic Expression of OvPAP2 Identified in Brassica napus-Orychophragmus violaceus Addition Line by Comparative Transcriptome Analysis

Project description:Oilseed rape is both an important oleaginous crop and agriculture sightseeing crop whereas has relatively scanty flower color. As natural ﬂavonoids, Anthocyanin are responsible for the attractive red, purple, and blue colors of various tissues in higher plants, especially for the ornamental plants flower. One Brassica napus-Orychophragmus violaceus disomic addition line (M4) obtained previously exhibits red petals whichresult from anthocyanin biosynthesis. Transcriptome analysis of M4, B. napus (H3), natural individuals of O. violaceus with purple petals (OvP) and white petals (OvW) revealed that most of structural genes for the anthocyanin synthesis were up-regulated in both M4 and OvP, especially key gene ANS in the last step. Reads assembling and sequence alignment showed that the regulatory DEG PAP2 in M4 was from the transcript of O. violaceus. OvPAP2 was transformed into Arabidopsis thaliana and B. napus driven by the CaMV35S promoter and the rape petal-specific prompter XY355. Transgenic A. thaliana plants showed different levels of purple pigments in most of the organs, including the petals, and transgenic B. napus flowers exhibited restricted accumulation of anthocyanins in stamens when driven by CaMV35S promoter, but generated both red petals and anthers driven by the XY355 promoter. These results provided a platform for expounding the anthocyanin biosynthesis pathway in B. napus petals and give a successful case for flower color modification of the agriculture sightseeing rape.

2017-12-30 | GSE93089 | GEO

E-GEOD-35700

Project description:Expression data from low Red:Far-Red ratio and Jasmonic Acid crosstalk in Arabidopsis

2015-11-27 | E-GEOD-35700 | ExpressionAtlas

E-GEOD-41586

Project description:Expression data for HT29 cells treated with 5-aza-deoxy-cytidine [RNA-Seq]

2025-01-24 | E-GEOD-41586 | ExpressionAtlas

Gentiana scabra var. buergeri

Project description:Post-transcriptional gene silencing of chalcone synthase gene causes corolla lobe-specific whiting of Japanese gentian.

| PRJDB12351 | ENA

Expression data from KOBU-induced Arabidopsis

Project description:Plant viruses induce various disease symptoms, but their underlying mechanisms are poorly understood. Kobu-sho is a disease in gentian that show gall formation with ectopic development of lignified cells and vascular tissues such as xylem. Recently, we identified a novel unusual RNA virus, gentian Kobu-sho-associated virus (GKaV) from Kobu-sho-affected gentian. Here, we show that a gene fragment of GKaV, Kobu-sho-inducing factor (KOBU), induces gall formation accompanied with ectopic development of lignified cells and xylem-like tissue in Nicotiana benthamiana. We identify KOBU by screening using potato virus X vector in N. benthamiana, and confirm that transgenic gentian expressing KOBU causes tumorous symptom. Transgenic Arabidopsis thaliana expressing KOBU activates signaling pathways regulating xylem development. KOBU protein forms granules and plate-like structures and co-localizes with mRNA splicing factors within nucleus. Our findings provide novel insights into not only virus disease development but also vascular development in plant.

2018-04-01 | GSE107074 | GEO

Gentiana triflora

Project description:RNA-seq analysis for the targeting flowering in Gentiana triflora

| PRJDB13927 | ENA

E-GEOD-83676

Project description:Time course RNA-seq data from barley infested with Tetranychus urticae and Banks grass mite

2018-01-03 | E-GEOD-83676 | ExpressionAtlas