Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq of Wister Rat blood serum to investigate small non-coding RNAs in serum as biomarkers of tendon injury

ABSTRACT: RNA-seq of Wister Rat blood serum to investigate small non-coding RNAs in serum as biomarkers of tendon injury

PROVIDER: PRJEB40153 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR4557740_1.fastq.gz	Fastqsanger.gz
	ERR4557740_2.fastq.gz	Fastqsanger.gz
	ERR4557741_1.fastq.gz	Fastqsanger.gz
	ERR4557741_2.fastq.gz	Fastqsanger.gz
	ERR4557742_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

RNA-seq of Wister Rat blood serum to investigate small non-coding RNAs in serum as biomarkers of tendon injury

Project description:Injury was induced in the left Achilles tendon by needle puncture. Rats were sacrificed 4 and 21 days post injury. Shams, in which the tendon was isolated but not punctured, were included as controls. Serum was collected post-mortem and RNAseq used to identify differentially expressed ncRNAs.

2021-03-31 | E-MTAB-9509 | biostudies-arrayexpress

RNA-seq analysis of Scx-lineage cell depletion to investigate tendon cell functions during flexor tendon healing

Project description:Little is understood about the roles of tendon cells during flexor tendon healing. To better understand tendon cell functions, the Scx-Cre mouse was crossed to the DTR mouse model to facilitate scleraxis lineage cell depletion prior to acute flexor tendon injury and repair. WT (cre-) and experimental (cre+) mice underwent complete transection and repair of the flexor digitorum longus tendon. Repaired tendons were harvested at 14 and 28 days post-repair for bulk RNA-Seq analysis to examine possible mechanisms driving differential healing due to Scx lineage cell depletion.

2021-02-08 | GSE156157 | GEO

Natural variation of circulating RNAs in human serum

Project description:Non-coding RNA (ncRNA) molecules have fundamental roles in cells and many are also stable in body fluids as extracellular RNAs. In these studies, we used RNA sequencing (RNA-seq) to investigate the profile of small non-coding RNA (sncRNA) in human serum. We analyzed more than 10 billion Illumina reads from more than 500 serum samples, included in the Norwegian population-based Janus Serum Bank (JSB). Our results suggest that many circulating RNAs in serum can be potential biomarkers and they are associated with different traits including age, sex, smoking, body size etc.

| EGAS00001002814 | EGA

RNA-seq analysis of Scx-lineage cell depletion to investigate tendon cell functions during flexor tendon healing

Project description:RNA-seq analysis of Scx-lineage cell depletion to investigate tendon cell functions during flexor tendon healing

| PRJNA656853 | ENA

Serum miRNA as Potential Biomarkers for ovarian cancer

Project description:Serum miRNA as Potential Biomarkers for ovarian cancer

| PRJNA832738 | ENA

Serum coding and non-coding RNAs as biomarkers of NAFLD and fibrosis severity.

Project description: Not available

| S-EPMC6771597 | biostudies-literature

RNA sequencing of native and ex vivo cultured murine tail tendon fascicles

Project description:Tendon fascicles were analysed directly after isolation from the tail of freshly euthanized mice and after of after ex vivo culture for 6 days. Fascicles were cultured in either serum containing medium (10%) or in serum-free medium at 21% oxygen and 37 degrees celsius.

2020-09-15 | E-MTAB-9540 | biostudies-arrayexpress

Identification of potential biomarkers for patients with neurodegenerative parkinsonian syndromes using serum cytokine microarray analysis

Project description:This SuperSeries is composed of the following subset Series: GSE32037: Identification of potential biomarkers for patients with neurodegenerative parkinsonian syndromes using serum cytokine microarray analysis; series 6 GSE32039: Identification of potential biomarkers for patients with neurodegenerative parkinsonian syndromes using serum cytokine microarray analysis; series 7 GSE32040: Identification of potential biomarkers for patients with neurodegenerative parkinsonian syndromes using serum cytokine microarray analysis; series 8 Refer to individual Series

2011-11-23 | E-GEOD-32041 | biostudies-arrayexpress

Tendon injury

Project description:Tendon injury

| PRJNA1027305 | ENA

Circulating serum microRNAs as potential diagnostic biomarkers of post-traumatic stress disorder: A pilot study

Project description:In this pilot study, we analyzed serum microRNA profiles of subjects with post-traumatic stress disorders in order to determine their potential to be used as diagnostic biomarkers. We discovered that serum microRNAs could potentially serve as diagnostic biomarkers of PTSD, both individually or grouped within a cluster of co-expressed miRNAs.

2020-10-24 | GSE137624 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data