Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome of the Western Spadefoot toad

ABSTRACT: Chromosome-level assembly, annotation and phylome of Pelobates cultripes, the Western Spadefoot toad

PROVIDER: PRJEB48197 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR7184422.fastq.gz	Fastqsanger.gz
	ERR7184423.fastq.gz	Fastqsanger.gz
	ERR7184424.fastq.gz	Fastqsanger.gz
	ERR8266510_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Project description:Pelobates fuscus (common spadefoot toad) genome, aPelFus1

| PRJNA1062344 | ENA

Pelobates fuscus isolate:aPelFus1

Project description:Pelobates fuscus (common spadefoot toad) genome, aPelFus1, primary

| PRJNA1060730 | ENA

Pelobates fuscus isolate:aPelFus1

Project description:Pelobates fuscus (common spadefoot toad) genome, aPelFus1, haplotype 1

| PRJNA1060731 | ENA

Pelobates fuscus isolate:aPelFus1

Project description:Pelobates fuscus (common spadefoot toad) genome, aPelFus1, haplotype 2

| PRJNA1060732 | ENA

Cane Toad Metamorphis

Project description:Comparison of pre and post metamorphis phases of cane toad Keywords: Developmental Stages

2008-11-27 | GSE6987 | GEO

Cane Toad Metamorphis

Project description:Comparison of pre and post metamorphis phases of cane toad Keywords: Developmental Stages Samples were harvested at 9, 18, 28 (pre-metamorph), 30 and 53 (post-metamorph) days of age and RNA extracted using Trizol Reagent (Invitrogen). Total RNA (100 mg) was reverse transcribed (Qiagen) and labelled cDNA probes were generated using the fluorophores, Cy3 and Cy5 (Amersham Pharmacia Biotech). Prehybridization of slides, application of the probe to the microarray slides, hybridisation, and subsequent washing steps were performed according to manufacturer's instructions (Corning Microarray Technology). Slides were scanned and analysed with a GenePix 4000B laser scanner and GenePix 3.0 and 4.0 software (Axon Instruments).

2008-11-27 | E-GEOD-6987 | biostudies-arrayexpress

Ocular Inoculation of Toad Venom: Toxic Cataract and Proteomic Profiling

Project description:Purpose: To report a singular case of cataract caused by toad venom inoculation and to scrutinize the pathological mechanisms through proteomic sequencing of the lens specimen. Methods: A young Chinese male presented with progressively deteriorating vision in his right eye subsequent to a history of toad venom inoculation. He was diagnosed with a toxic cataract, and underwent phacoemulsification cataract surgery. Anterior capsule, nucleus, and cortex specimens from the patient (designated as PT_CAP, PT_PHACO, and PT_CTX, respectively) and age-related cataract controls (C_CAP, C_PHACO, and C_CTX, respectively) were collected and subjected to 4D label-free quantitative proteomics. Results: A multitude of differentially expressed proteins (DEPs) were identified in the patient's lens compared to those in the controls. Specifically, a total of 204 DEPs were identified in PT_CAP compared to C_CAP, with MYH6, MYL2, MYL3, STAT1, and ANK1 among the foremost regulated DEPs. The DEPs of PT_CAP were principally affiliated with functions including "transportation of small molecules", "regulation of metal ion transport", and "import into cell". A sum of 109 DEPs were delineated in PT_CTX compared to C_CTX, with TPM1 among the top-10 downregulated DEPs. Ninety-five DEPs were pinpointed in PT_PHACO compared to C_PHACO, with hexokinase among the top 10 downregulated DEPs. These proteins were ascertained to be linked with Na+/K+-ATPase activity. Conclusion: This study introduced the first documented case of toxic cataract caused by toad venom inoculation. Proteomic sequencing indicated a correlation between cataract and alterations in Na+/K+-ATPase activity, providing insights for the clinical management of ocular toad venom inoculation in subsequent cases.

2025-05-13 | PXD058328 | Pride

Boreal toad microbiome

Project description:Captivity, reintroduction, and the boreal toad microbiome

| PRJEB53984 | ENA

Boreal Toad (Anaxyrus Boreas)

Project description:Boreal toad project (Anaxyrus boreas)

| PRJNA427374 | ENA

Cane Toad (Rhinella marina) genome project

Project description:De novo whole genome sequencing and assembly of the invasive cane toad, Rhinella marina

| PRJEB24695 | ENA