Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Undefined

ABSTRACT: Whole-genome re-sequencing of barley cultivar Chikurin Ibaraki 1

PROVIDER: PRJEB50079 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR8015082.fastq.gz	Fastqsanger.gz
	ERR8015083.fastq.gz	Fastqsanger.gz
	ERR8015084.fastq.gz	Fastqsanger.gz
	ERR8015085.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

A multicenter translational biomarker phase II trial of regorafenib in patients with non-resectable pretreated colorectal cancer.

Project description:Primary objectives: The primary objective is to investigate circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS). Primary endpoints: circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS).

| 2533916 | ecrin-mdr-crc

Barley seed proteome - Shotgun proteomics of the barley seed proteome

Project description:Quantitative comparison of proteomes from two-rows (Conrad cultivar) and six-rows (Lacey cultivar) barley seeds.

2018-01-25 | PXD004006 | Pride

BBSRC Waugh BarleyRNAseq

Project description:Eight tissues of cultivar Morex (three biological replications each) earmarking stages of the barley life cycle from germinating grain to maturing caryopsis were selected for deep RNA sequencing (RNA-seq)

2012-07-13 | E-MTAB-2809 | biostudies-arrayexpress

Barley gene expression during compatible and incompatible infection with the smut fungus Ustilago hordei

Project description:Ustilago hordei is a basidiomycete fungus that infects barley and oats. It has a narrow host range and can infect only germinating seedlings. Symptoms do not occur until heading of the mature plants when the fungus has proliferated in meristematic tissue and replaces kernels with masses of black teliospores. Incompatibility is due to the presence of an avirulence effector product, UhAVR1, expressed in the fungus upon infection and secreted into the host, which is subsequently recognized by the barley plant resistance gene product RUH1 in cultivar Hannchen, leading to plant cell death, fungal growth arrest, and no disease. We have identified UhAvr1, and the transcriptome response of the barley plant to strains with and deleted for this gene was assessed using the 22K Affymetrix barley array. Incompatibility and cell death is apparent at 48 hrs after inoculation, so the transcriptome was assessed at this time point. For comparison, the transcriptome of barley cultivar Odessa, which lacks resistance gene Ruh1, during a compatible interaction was also assessed.

2020-12-31 | GSE48845 | GEO

Genome sequencing of 22 Pseudomonas isolates from the rhizosphere of the barley variety Chevallier and 20 Psuedomonas isolates from the rhizosphere of the barley variety Tipple.

Project description:Chevallier is a heritage english landrace of barley first planted in 1820 while Tipple is modern cultivar of barley released in 2004. Pseudomonas strains were isolated from the rhizospheres of the two varieties and 22 and 20 of the most phylogenetically distinct ones were sequenced to find out the difference in genotypes preferentially selected in the rhizospheres of the two cultivars.

2023-06-15 | E-MTAB-12917 | biostudies-arrayexpress

undefined

Project description:AGENT-GBS-Barley-Main

| PRJEB56183 | ENA

undefined

Project description:Barley spikelet abortion transcriptome

| PRJEB51366 | ENA

undefined

Project description:Hemicordylus capensis whole-genome sequencing

| PRJEB52897 | ENA

Project description:Low-pass whole genome shotgun sequencing of barley cultivar Barke

| PRJEB2738 | ENA