Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Dutch input in DiSCoVer - One Health EJP WP2 discovering the sources of STEC

ABSTRACT: NGS data of Dutch STEC isolates for source attribution models.

PROVIDER: PRJEB57600 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR10711900_1.fastq.gz	Fastqsanger.gz
	ERR10711900_2.fastq.gz	Fastqsanger.gz
	ERR10712000_1.fastq.gz	Fastqsanger.gz
	ERR10712000_2.fastq.gz	Fastqsanger.gz
	ERR10712100_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 1200

Similar Datasets

DiSCoVer-PIWet-Poland-STEC

Project description:DiSCoVer-PIWet-STEC

| PRJEB57392 | ENA

RNA SEQ STEC FHI96 Type III mod

Project description:Comparison of RNA expression profiles from STEC strain FHI96 expressing methyltransferase mod (ON; 52reps) or not (OFF; 51reps).

2024-06-30 | GSE129787 | GEO

4D-FastDIA quantitative phosphorylation modification omics analysis before and after expression of Salmonella effector SteC in RAW264.7 cell

Project description:The Salmonella effector SteC is the only protein kinase encoded by Salmonella pathogenicity island 2 that is secreted through the type III secretion system. SteC is known to trigger actin rearrangement via the phosphorylated MEK pathway, and our previous experiments demonstrated that the migration process of macrophages found during Salmonella infection is dependent on the rearrangement of the host cell actin backbone and the action of SteC.To further investigate the target of SteC in the host, we constructed a SteC-RAW264.7 cell line and performed phosphomics analysis using 4D-FastDIA to identify the direct substrates of SteC that trigger macrophage migration and lead to cytoskeletal rearrangement.

2024-02-22 | PXD042038 | Pride

Blood DNA methylation profiles in a Dutch population

Project description:Genome wide DNA methylation profiling of whole blood in schizophrenia patients and healthy subjects of different ages. The Illumina Infinium 450k Human DNA methylation Beadchip v1.2 was used to obtain DNA methylation profiles across approximately 480,000 CpGs. Dataset included 62 schizophrenia patients and 33 healthy subjects from Dutch descent.

2012-10-19 | GSE41169 | GEO

Molecular surveillance of STEC

Project description:Routine surveillance of STEC at the Belgian NRC STEC

| PRJEB54005 | ENA

pO157 STEC

Project description:Characterisation of the pO157 plasmid in STEC

| PRJEB37182 | ENA

STEC from Swedish cervids

Project description:STEC from Swedish cervids

| PRJEB53334 | ENA

Molecular surveillance of STEC

Project description:Molecular surveillance of STEC