Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

MRNA-Seq of Danio rerio exposed to different concentrations of the fungicide difenoconazole against untreated control groups

ABSTRACT: mRNA-Seq of Danio rerio exposed to different concentrations of the fungicide difenoconazole against untreated control groups

PROVIDER: PRJEB65329 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR11872216.fastq.gz	Fastqsanger.gz
	ERR11872217.fastq.gz	Fastqsanger.gz
	ERR11872218.fastq.gz	Fastqsanger.gz
	ERR11872219.fastq.gz	Fastqsanger.gz
	ERR11872220.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 9

Similar Datasets

Quantitative profiling of proteome extracted from zebrafish embryos exposed to different concentrations of the fungicide difenoconazole against untreated control groups.

Project description:In the present study OMICs analysis was employed to investigate the early molecular responses of zebrafish embryos to exposure to the fungicide difenoconazole. Difenoconazole, a sterol biosynthesis inhibitor according to Fungicide Resistance Action Committee (FRAC) classification, may also induce adverse effects on non-target organisms inhabiting the environment. Early molecular responses in terms of transcriptome and proteome analysis were investigated and refined to select potentially substance specific biomarker candidates for early prediction of difenoconazole toxicity in zebrafish embryos.

2024-01-02 | PXD045650 | Pride

mRNA-Seq of Danio rerio exposed to different concentrations of the fungicide difenoconazole against untreated control groups

Project description:In the present study transcriptome analysis was employed to investigate the early molecular responses to exposure to the fungicide difenoconazole, a sterol biosynthesis inhibitor according to Fungicide Resistance Action Committee (FRAC) classification. Zebrafish embryos were exposed to difenoconazole according to OECD guidelines (OECD test No. 236). At the end of exposure time (96 hours), simultaneous RNA and protein extraction from 10 embryos was performed using a Macherey & Nagel RNA/protein extraction kit. The obtained RNA extracts were sequenced using Illumina HiSeq 4000 System and the obtained sequences went through bioinformatic analysis pipeline to Identify and count the detected gene sequences followed by differential gene expression analysis. Finally, potential substance specific biomarker candidates were refined and selected based on the differential expression patterns and the biological functions investigation of the detected DEGs.

2024-01-01 | E-MTAB-13269 | biostudies-arrayexpress

mRNA-Seq of Danio rerio exposed to different concentrations of the fungicide difenoconazole against untreated control groups

2025-04-08 | E-MTAB-14536 | biostudies-arrayexpress

mRNA-Seq of Danio rerio exposed to different concentrations of the fungicide difenoconazole against untreated control groups

Project description:mRNA-Seq of Danio rerio exposed to different concentrations of the fungicide difenoconazole against untreated control groups

| PRJEB81172 | ENA

mRNA-Seq of Danio rerio exposed to different concentrations of fungicide epoxiconazole against untreated control groups

Project description:mRNA-Seq of Danio rerio exposed to different concentrations of fungicide epoxiconazole against untreated control groups

| PRJEB81170 | ENA

mRNA-Seq of Danio rerio exposed to different concentrations of fungicide tebuconazole against untreated control groups

Project description:mRNA-Seq of Danio rerio exposed to different concentrations of fungicide tebuconazole against untreated control groups

| PRJEB81171 | ENA

mRNA-Seq of Danio rerio exposed to different concentrations of the fungicide metalaxyl against untreated control groups

Project description:mRNA-Seq of Danio rerio exposed to different concentrations of the fungicide metalaxyl against untreated control groups

| PRJEB65331 | ENA

Fungicide resistance RNA-seq on two isolates of Penicillium

Project description:Exposure of a resistance and sensitive isolate of Penicillium to difenoconazole fungicide and acetone as a control for 24 hours.

2020-04-20 | GSE145355 | GEO

Quantitative profiling of proteome extracted from zebrafish embryos exposed to different concentrations of the fungicide metalaxyl against untreated control groups.

Project description:In the present study OMICs analysis was employed to investigate the early molecular responses of zebrafish embryos to exposure to the fungicide metalaxyl. Metalaxyl, a nucleic acid metabolism inhibitor according to Fungicide Resistance Action Committee (FRAC) classification, may also induce adverse effects on non-target organisms inhabiting the environment. Early molecular responses in terms of transcriptome and proteome analysis were investigated and refined to select potentially substance specific biomarker candidates for early prediction of metalaxyl toxicity in zebrafish embryos.

2024-01-02 | PXD045444 | Pride

mRNA-Seq of Danio rerio exposed to different concentrations of the fungicide metalaxyl against untreated control groups

Project description:In the present study transcriptome analysis was employed to investigate the early molecular responses to exposure to the fungicide metalaxyl, a nucleic acids metabolism inhibitor according to Fungicide Resistance Action Committee (FRAC) classification. Zebrafish embryos were exposed to metalaxyl according to OECD guidelines (OECD test No. 236). At the end of exposure time (96 hours), simultaneous RNA and protein extraction from 10 embryos was performed using a Macherey & Nagel RNA/protein extraction kit. The obtained RNA extracts were sequenced using Illumina HiSeq 4000 System and the obtained sequences went through bioinformatic analysis pipeline to Identify and count the detected gene sequences followed by differential gene expression analysis. Finally, potential substance specific biomarker candidates were refined and selected based on the differential expression patterns and the biological functions investigation of the detected DEGs.

2024-01-01 | E-MTAB-13270 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data