Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

MRupRup

ABSTRACT: Rupicapra rupicapra, genomic and transcriptomic data.

PROVIDER: PRJEB67658 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR12139300_1.fastq.gz	Fastqsanger.gz
	ERR12139300_2.fastq.gz	Fastqsanger.gz
	ERR12139301_1.fastq.gz	Fastqsanger.gz
	ERR12139301_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 55

Similar Datasets

mRupRup

Project description:Rupicapra rupicapra

| PRJEB73452 | ENA

Rupicapra rupicapra

Project description:Rupicapra rupicapra overview

| PRJNA194190 | ENA

mRupRup1

Project description:Rupicapra rupicapra, genome assembly, mRupRup1.

| PRJEB67659 | ENA

Rupicapra rupicapra

Project description:Alpine chamois (Rupicapra rupicapra) MHC II-DRB locus

| PRJNA417529 | ENA

Project description:Alpine chamois (Rupicapra rupicapra) MHC II DRB locus

| PRJNA662939 | ENA

Rupicapra pyrenaica

Project description:Rupicapra pyrenaica overview

| PRJNA194277 | ENA

Project description:ddRADseq for population genetics of the Nothern Chamois Rupicapra rupicapra

| PRJNA813419 | ENA

Tropheryma whipplei proteome - Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme

Project description:Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme. Testing systematic exchanges of nucleotides over long stretches produces inversed RNA pieces (here named “swinger” RNA) differing from their template DNA. These may explain some trashed data. Here analyses of genomic, transcriptomic and proteomic data of the pathogenic Tropheryma whipplei according to canonical genomic, transcriptomic and translational 'rules' resulted in trashing 58.9% of DNA, 37.7% RNA and about 85% of mass spectra (corresponding to peptides). In the trash, we found numerous DNA/RNA fragments compatible with “swinger” polymerization. Genomic sequences covered by «swinger» DNA and RNA are 3X more frequent than expected by chance and explained 12.4 and 20.8% of the rejected DNA and RNA sequences, respectively. As for peptides, several match with “swinger” RNAs, including some chimera, translated from both regular, and «swinger» transcripts, notably for ribosomal RNAs. Congruence of DNA, RNA and peptides resulting from the same swinging process suggest that systematic nucleotide exchanges increase coding potential, and may add to evolutionary diversification of bacterial populations.

2017-12-18 | PXD006238 | Pride

tfGorAlbo

Project description:Gordius_albopunctatus, genomic and transcriptomic data

| PRJEB78907 | ENA

chamois

Project description:Microbial adaption of chamois (Rupicapra rupicapra) to different seasons in the Bavarian alps

| PRJEB62186 | ENA