Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Development of superior haplotype based near isogenic lines HaploNILs for enhanced genetic gain in rice

ABSTRACT: Development of superior haplotype based near isogenic lines HaploNILs for enhanced genetic gain in rice

PROVIDER: PRJEB70241 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR12304009_1.fastq.gz	Fastqsanger.gz
	ERR12304009_2.fastq.gz	Fastqsanger.gz
	ERR12303753_1.fastq.gz	Fastqsanger.gz
	ERR12303753_2.fastq.gz	Fastqsanger.gz
	ERR12302763_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

Enhanced DMS-MaP enables superior RNA structural analysis

Project description:Enhanced DMS-MaP enables superior RNA structural analysis

| PRJNA935379 | ENA

Phaseolus vulgaris cultivar:Near isogenic lines

Project description:Phaseolus vulgaris cultivar:Near isogenic lines Transcriptome or Gene expression

| PRJNA342420 | ENA

Collagen-Enhanced Piezoelectric PLLA/ZnO Microfiber Barrier Membranes for Superior Bone Regeneration

Project description:Collagen-Enhanced Piezoelectric PLLA/ZnO Microfiber Barrier Membranes for Superior Bone Regeneration

| PRJNA1220602 | ENA

Project description:Development of Superior Haplotype based Near Isogenic Lines (Haplo-NILs) for Enhanced Genetic Gain in Rice.

| PRJNA1148323 | ENA

Rare non-canonical megakaryocyte progenitors increase in number and gain enhanced function with age

Project description:Rare non-canonical megakaryocyte progenitors increase in number and gain enhanced function with age

2025-09-23 | GSE280357 | GEO

RNA sequencing of the Hordeum vulgare near-isogenic line mnd1.a

Project description:RNA sequencing of the near-isogenic line mnd1.a in cv. Bowman background, compared to cv. Mesa and cv. Bowman Purpose: Expression analysis and variant calling.

2020-04-23 | GSE149110 | GEO

An immature high-oleic acid near-isogenic line of rapeseed

Project description:To identify differentially expressed proteins in a high-oleic acid rapeseed line, self-bred seeds (20 to 35 days after pollination) of a high- and a low-oleic acid rapeseed near-isogenic line (oleic acid contents of 81.4% and 56.2%, respectively) were used as raw materials for iTRAQ (isobaric tags for relative and absolute quantitation) analysis.

2022-02-23 | PXD006491 | Pride

Accelerated development of rice stripe virus-resistant, near-isogenic rice lines through marker-assisted backcrossing.

Project description: Not available

| S-EPMC6892552 | biostudies-literature

Metabolomic Discrimination of Near Isogenic Low and High Phytate Soybean Seeds

Project description:Methodologies for untargeted metabolomic profiling using liquid chromatography-mass spectrometry (LC-MS) were developed and applied to lipid-depleted methanolic extracts of soybeans seeds obtained from four near isogenic soybean lines (NILs) that differed in phytate content. The four lines differed in mutations for genes encoding two highly homologous multi-drug resistant proteins (MRPs). The double mutant exhibited the low phytate/emergence phenotype whereas the other three NILs, namely the two single mutants and the wild type, did not. Lipid-depleted aqueous methanol extracts were analyzed by orthogonal chromatographic separations (reversed-phase and hydrophilic interaction) in both positive and negative ionization modes. Principal component analysis (PCA) of the LC-MS data clearly separated the low phytate line from the other three, with the major metabolite differences residing in the soyasaponin composition. Group A soyasaponins containing C22-terminated acetylated glucosides were of much lower concentration in the low phytate line, which favored terminally acetylated xyloside-based soyasaponins (soyasaponin A4, A5 and A6). Differing levels of the allergen Gly m 1 were also detected.

2016-02-04 | MTBLS120 | MetaboLights

Differential expressions of microRNAs involve the development of superior and inferior spikelets in rice (Oryza sativa)

Project description:We aimed to identify differential expression of microRNAs between superior and inferior spikelets by using a deep sequencing approach developed by Solexa (Illumina). Two small RNA libraries were constructed from superior and inferior spikelets at 18 days after fertilization, and more than nine million small RNA sequence reads were generated for each library. Totals of 351 and 312 known miRNAs were obtained from the superior and inferior spikelets, respectively. Analysis of the expression profiles of these miRNAs showed that 189 miRNAs were differentially expressed between superior spikelets and inferior spikelets. In addition, 43 novel miRNAs were identified mostly by the accumulations of miRNA*s were also expressed differentially. Further analysis shows that these miRNAs may individually participate in regulating hormone metabolism, carbohydrate metabolic pathways, and cell division during rice grain development. These results indicate that slow grain filling and low grain weight of rice inferior spikelets probably relation to the expression and function differences between superior and inferior spikelet miRNAs. Examination of 2 different small RNA expression profilings in superior and inferior spikelets at 18 days after fertilization.

2011-03-19 | E-GEOD-28028 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data