Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

CUT&RUN of HOXA6 and HOXB6 in neuronal-derived human embryonic stem cells

ABSTRACT: CUT&RUN of HOXA6 and HOXB6 in neuronal-derived human embryonic stem cells

PROVIDER: PRJEB71145 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR12365594.fastq.gz	Fastqsanger.gz
	ERR12365595.fastq.gz	Fastqsanger.gz
	ERR12365596.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

CUT&RUN of HOXA6 and HOXB6 in neuronal-derived human embryonic stem cells

Project description:CUT&RUN analysis of HOXA6 and HOXB6 binding sites in neuronal-derived human embryonic stem cells

2024-04-30 | E-MTAB-13627 | biostudies-arrayexpress

CUT&RUN sequencing - E12 mouse embryonic cortices ZBTB7A - GATAD2B - H3K27ac…

Project description:These are CUT&RUN analyses performed with embryonic day 12 (E12) CD1 mouse neocortices. Targets were ZBTB7A, GATAD2B, H3K4Me3, H3K4Me1, H3K27Ac, and IgG control.

2025-04-09 | GSE294107 | GEO

Astrocyte glucocorticoid receptor signaling restricts neuronal plasticity [CUT&RUN]

Project description:Astrocyte glucocorticoid receptor signaling restricts neuronal plasticity [CUT&RUN]

| PRJNA1310311 | ENA

CUT&RUN HUDEP1 OE SOX6-Flag

Project description:SOX6 CUT&RUN on HUDEP1 over expressing SOX6-Flag. The experiment is done using and anti Flag Ab to assist the genome wide binding profile of SOX6 in HUDEP1 (Human Umbilical cord blood-Derived Erythroid Progenitor-1).

2023-04-07 | E-MTAB-12800 | biostudies-arrayexpress

CUT&RUN data of Chd4 and Mbd3 in mouse embryonic stem cells

Project description:This study investigates the role of ADNP in regulating CHD4 and MBD3 binding using CUT&RUN. CUT&RUN was performed to capture changes in the binding of CHD4 (using FLAG-tag) and MBD3. Two biological replicates were processed for each protein with two technical replicates. This dataset aims to characterise the binding of CHD4 and MBD3 in mouse ES cells.

2026-01-15 | E-MTAB-15606 | biostudies-arrayexpress

Identification of chromatin states during zebrafish gastrulation using CUT&RUN and CUT&Tag

Project description:Here we describe successful implementation of CUT&RUN for profiling protein-DNA interactions in zebrafish embryos. We apply modified a CUT&RUN method to generate high resolution maps of enrichment for H3K4me3, H3K27me3, H3K9me3, and RNA polymerase II during zebrafish gastrulation. Using this data, we identify a conserved subset of developmental genes that are enriched in both H3K4me3 and H3K27me3 during gastrulation, and we demonstrate the increased effectiveness of CUT&RUN for detecting protein enrichment at repetitive sequences with reduced mappability. Our work demonstrates the power of combining CUT&RUN with the strengths of the zebrafish system to better understand the changing embryonic chromatin landscape and its roles in shaping development.

2021-06-17 | GSE178343 | GEO

CUT&RUN for MG53 in BMDMs

Project description:We performed Cleavage Under Targets and Release Using Nuclease (CUT&RUN) assays in BMDMs, deciphered MG53's binding site.

2025-11-16 | E-MTAB-15805 | biostudies-arrayexpress

H3K4me3 CUT&RUN profiling in wild-type mouse embryonic stem cells (mESCs)

Project description:H3K4me3 occupancy profiles were generated for wild-type mESCs using the CUT&RUN assay. Matched non-targeting IgG samples were included as negative controls to ensure specificity of enrichment.

2026-07-01 | E-MTAB-17000 | biostudies-arrayexpress

CUT&RUN sequencing - E12 mouse embryonic cortices ZBTB7A - GATAD2B - H3K27ac…

Project description:CUT&RUN sequencing - E12 mouse embryonic cortices ZBTB7A - GATAD2B - H3K27ac…

| PRJNA1248393 | ENA

Bidirectional perisomatic inhibitory plasticity of a Fos neuronal network [CUT&RUN]

Project description:Bidirectional perisomatic inhibitory plasticity of a Fos neuronal network [CUT&RUN]

| PRJNA666680 | ENA