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ABSTRACT: metagenome assembly of PRJNA616181 data set (Nostoc-Peltigera symbioses).

PROVIDER: PRJEB72393 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR11456913_scaffolds.fa.gz	Other
	SRR11456917_scaffolds.fa.gz	Other
	SRR11456919_scaffolds.fa.gz	Other
	SRR11456921_scaffolds.fa.gz	Other
	SRR11456915_scaffolds.fa.gz	Other

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The cyanobacterium, Nostoc punctiforme can protect against programmed cell death and induce defence genes in Arabidopsis thaliana.

Project description:Many cyanobacteria can form nitrogen-fixing symbioses with a broad range of plant species. Unlike other plant-bacteria symbioses, little is understood about the immunological responses induced by plant cyanobionts (symbiotic cyanobacteria). Here, we used Arabidopsis thaliana suspension cell cultures as a model system to demonstrate that the model plant-symbiotic cyanobacteria, Nostoc punctiforme is capable of protecting against plant programmed cell death (PCD). We also profiled the early transcriptomic changes that were induced in response to conditioned medium (CM) from N. punctiforme cell cultures. Interestingly, the PCD reduction was preceded by the induction of genes associated with defence and immunity, the most striking of which were a number of WRKY-family transcription factors. Down-regulated included genes involved in the regulation of cell growth and differentiation. This work is the first to show that a cyanobacteria can regulate plant PCD and provides a useful transcriptome resource for studying early plant cell responses to symbiotic cyanobacteria.

2020-12-10 | GSE155980 | GEO

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Project description:Nostoc sp. 'Peltigera membranacea cyanobiont' N6 strain:N6 Genome sequencing and assembly

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Nostoc sp. 'Peltigera malacea cyanobiont' DB3992

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symbiont metagenome

Project description:Peltigera membranacea lichen Metagenome

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Comparative transcriptomics of wild-type (Nostoc punctiforme ATCC 29133) and hmpD-deletion strains (UCD 543) of Nostoc punctiforme ATCC 29133

Project description:Change in gene expression for a wild-type (Nostoc punctiforme ATCC 29133) and hmpD-deletion strain (UCD 543) of Nostoc punctiforme ATCC 29133 over the time course of hormogonium development This study is further descirbed in Risser, D.D. and Meeks, J.C. 2013. Comparative transcriptomics with a motility deficient mutant leads to identification of a novel polysaccharide secretion system in Nostoc punctiforme. Molecular Microbiology Total RNA from 3 biological replicates at each time point from 0 to 24 hours after hormogonium induction was converted to cDNA, dye-labled and hybridized to nimblegen 12x135k array slides

2013-01-01 | E-GEOD-42859 | biostudies-arrayexpress

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