Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Cacao diversity

ABSTRACT: Creating a core collection of cacao based on diversity

PROVIDER: PRJEB75153 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR13166400_1.fastq.gz	Fastqsanger.gz
	ERR13166400_2.fastq.gz	Fastqsanger.gz
	ERR13166500_1.fastq.gz	Fastqsanger.gz
	ERR13166500_2.fastq.gz	Fastqsanger.gz
	ERR13166401_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 642

Similar Datasets

Theobroma cacao

Project description:Theobroma cacao diversity

| PRJNA352916 | ENA

cacao seed development - System level analysis of cacao seed ripening reveals a sequential interplay of primary and secondary metabolism leading to polyphenol accumulation and preparation of stress resistance

Project description:integration of metabolomics and proteomics for understanding the molecular physiology of cacao seed development. Both the metabolomic and proteomic profiles of 4 developing stages' cacao seed were obtained from the mass spectrometry based platforms.

2016-05-09 | PXD002922 | Pride

Identification of self- and pathogen-targeted miRNAs from resistant and susceptible Theobroma cacao variety to black pod disease

Project description:Cacao (Theobroma cacao) is a highly valuable crop with growing demands in the global market. However, cacao farmers often face challenges posed by black pod disease caused by Phytophthora spp. with P. palmivora as the most dominant. Regulations of various gene expression influence plant resistance to pathogens. One mechanism involves targeting mRNA of virulence genes in the invading pathogens, suppressing their infection. However, resistance also could be suppressed by plant-derived miRNAs that target their own defense genes. The objective of this study is to identify differentially expressed miRNAs in black pod resistant and susceptible Cacao varieties and to predict their targets in T. cacao and P. palmivora transcripts. In our research, 54 known miRNAs from 40 miRNA families and 67 Novel miRNAs were identified. As much as 17 miRNAs were differentially expressed in susceptible variety compared to resistant one, with 9 miRNAs were upregulated and 8 miRNAs downregulated. In T. cacao transcripts, the upregulated miRNAs were predicted to target several genes, including defense genes. The suppression of these defense genes can lead to a reduction in plant resistance against pathogen infection. While in P. palmivora transcripts, the upregulated miRNAs were predicted to target several genes, including P. palmivora effector genes and other important metabolism activities genes. In the future, limiting expression of miRNAs that target T. cacao's defense genes and applying miRNAs that target P. palmivora effector genes hold promise for enhancing cacao plant resistance against P. palmivora infection.

2024-02-14 | GSE244955 | GEO

Small RNA loci annotation in cacao, spinach and carrot

Project description:Cacao, spinach and carrot are three important crops with high valuable markets. For these species there isn't already an available genome-wide annotation of small rna. Here, for the first time, we sequenced and annotated small RNAs.

2018-11-01 | GSE104673 | GEO

Comparison between saprotrophic and biotrophic-like mycelia of cacao WBD causal agent Moniliophthora perniciosa II

Project description:Moniliophthora perniciosa is the causal agent of cacao Witche´s broom disease. This disease has been causing extensive damages to Brazilian cacao plantation, especially in Southern Bahia. Using glass slides microarrays, we analyzed the expression profile of 3872 whole genome shotgun reads from M. perniciosa genome, comparing two stages of development (Biotrophic-like mycelia and saprotrophic mycelia). Keywords: Moniliophthora perniciosa, Witches Broom Disease, Pathogenesis, Cacao

2008-06-13 | GSE9627 | GEO

Comparison between saprotrophic and biotrophic-like mycelia of cacao WBD causal agent Moniliophthora perniciosa I

2008-06-13 | GSE9626 | GEO

Theobroma cacao

Project description:Theobroma cacao Map

| PRJNA162507 | ENA

Theobroma cacao

Project description:Theobroma cacao Map

| PRJNA162467 | ENA

Theobroma cacao

Project description:Theobroma cacao Map

| PRJNA162483 | ENA