Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

QmProOcel

ABSTRACT: Protonethes ocellatus, genomic and transcriptomic data

PROVIDER: PRJEB76567 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR14151075.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

ilSmeOcel

Project description:Smerinthus ocellatus, genomic and transcriptomic data

| PRJEB89632 | ENA

fSymOce1

Project description:Symphodus ocellatus (Ocellated wrasse) genomic and transcriptomic data (fSymOce1)

| PRJEB82430 | ENA

Transcriptomic responses to oil, a pathogen, or both in spleen and liver tissues from juvenile red drum (Sciaenops ocellatus)

Project description:The objective of this study was to determine how transcriptomic responses in the spleen and liver are altered in juvenile Sciaenops ocellatus exposed to oil, a known fish pathogen (Vibrio anguillarum), or both.

2019-08-22 | GSE136133 | GEO

E-GEOD-30573

Project description:Transcriptomic analysis of autistic brain reveals convergent molecular pathology [high-throughput sequence data]

2025-01-24 | E-GEOD-30573 | ExpressionAtlas

Venom proteomic analysis of two medically important Nigerian viperidae (Echis ocellatus and Bitis arietans) snake species

Project description:Hydrophilic interaction liquid chromatography coupled with LC- MS/MS was used to analyze the crude venom extracts of Echis ocellatus (Carpet viper) and Bitis arietans (Puff adder). The gel-free proteomic analysis of the crude venom extracts from E. ocellatus and B. arietans yielded the identification of 86 and 80 proteins, respectively. Seventy- nine proteins were common between the two snake species with a 90.8% similarity. The identified proteins belong to 12 protein families where serine proteases (22.31%) and metalloproteinases (21.06%) were the dominant proteins in the venom of B. arietans. Metalloproteinases (34.84%), phospholipase A 2 s (25.69%) and serine proteases (17.25%) represents the major toxins in the E. ocellatus venom. This study provides some valuable insights into the toxin families to be neutralized in case of envenomation.

2021-03-11 | PXD024638 | Pride

Tropheryma whipplei proteome - Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme

Project description:Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme. Testing systematic exchanges of nucleotides over long stretches produces inversed RNA pieces (here named “swinger” RNA) differing from their template DNA. These may explain some trashed data. Here analyses of genomic, transcriptomic and proteomic data of the pathogenic Tropheryma whipplei according to canonical genomic, transcriptomic and translational 'rules' resulted in trashing 58.9% of DNA, 37.7% RNA and about 85% of mass spectra (corresponding to peptides). In the trash, we found numerous DNA/RNA fragments compatible with “swinger” polymerization. Genomic sequences covered by «swinger» DNA and RNA are 3X more frequent than expected by chance and explained 12.4 and 20.8% of the rejected DNA and RNA sequences, respectively. As for peptides, several match with “swinger” RNAs, including some chimera, translated from both regular, and «swinger» transcripts, notably for ribosomal RNAs. Congruence of DNA, RNA and peptides resulting from the same swinging process suggest that systematic nucleotide exchanges increase coding potential, and may add to evolutionary diversification of bacterial populations.

2017-12-18 | PXD006238 | Pride

tfGorAlbo

Project description:Gordius_albopunctatus, genomic and transcriptomic data

| PRJEB78907 | ENA

iyCryArma

Project description:Cryptus armator, genomic and transcriptomic data

| PRJEB62888 | ENA

gzEntParv

Project description:Entomortierella parvispora, genomic and transcriptomic data

| PRJEB63113 | ENA

ilEreEmbl

Project description:Erebia embla, genomic and transcriptomic data