Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

IbLobSubt

ABSTRACT: Loboptera subterranea

PROVIDER: PRJEB77747 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR13374505.fastq.gz	Fastqsanger.gz
	ERR13766000_1.fastq.gz	Fastqsanger.gz
	ERR13766000_2.fastq.gz	Fastqsanger.gz
	ERR13766001_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 66

Similar Datasets

ibLobSubt1

Project description:Loboptera subterranea, genome assembly, ibLobSubt1.

| PRJEB77742 | ENA

ibLobSubt

Project description:Loboptera subterranea, genomic and transcriptomic data.

| PRJEB77741 | ENA

ibLobTrog

Project description:Loboptera troglobia

| PRJEB84189 | ENA

ibLobCana

Project description:Loboptera canariensis

| PRJEB77794 | ENA

In planta transcriptome and proteome profiles of Spongospora subterranea illuminates regulatory principles underlying host-pathogen interaction

Project description:Spongospora subterranea is an obligate biotrophic pathogen, causing a tremendous economic loss in the potato industry. Currently, there are no effective chemical or biological strategies for the control of S. subterranea. Understanding the gene regulation of pathogens in their host is dependent on multidimensional datasets. To further our understanding of S. subterranea biology during infection, we characterized the transcriptome and proteome of the pathogen inside the susceptible and resistant potato cultivars. A total of 7650 transcripts from S. subterranea were identified in the transcriptome analysis in which 1377 transcripts were differentially expressed between two cultivars. In proteome analysis, we identified 117 proteins with 14 proteins significantly changed in comparison between resistant and susceptible cultivars. The transcriptome analysis uncovered the gene regulatory modules underlying virulence. The functional annotation of transcriptome data indicated that the gene ontology terms related to the transportation and actin processes were induced in the resistant cultivar. The downregulation of enzyme activity and nucleic acid metabolism in the resistant cultivars suggesting a remarkable influence of these processes in the virulence of S. subterranea. The protein analysis results indicated that the majority of identified proteins were related to the metabolic processes. The present study provides a comprehensive molecular insight into the multiple layers of gene regulation that contribute to S. subterranea germination and growth in planta and illuminates the role of host immunity in affecting pathogen responses.

2022-02-17 | PXD027266 | Pride

ibLobCana1

Project description:Loboptera canariensis, genome assembly, ibLobCana1.

| PRJEB77792 | ENA

ibLobTrog1

Project description:Loboptera troglobia, genome assembly, ibLobTrog1.

| PRJEB77803 | ENA

Spongospora subterranea

Project description:Spongospora subterranea overview

| PRJNA1237457 | ENA

Atlantibacter subterraneus

Project description:Salmonella subterranea overview