Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

IyBarRidi

ABSTRACT: Baranisobas ridibundus, genomic and transcriptomic data

PROVIDER: PRJEB78757 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR13485725.fastq.gz	Fastqsanger.gz
	ERR13493982_1.fastq.gz	Fastqsanger.gz
	ERR13493982_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

bChrRid

Project description:Chroicocephalus ridibundus (black-headed gull), genomic and transcriptomic data

| PRJEB68287 | ENA

Chroicocephalus ridibundus

Project description:Chroicocephalus ridibundus

| PRJNA920923 | ENA

iyBarRidi

Project description:Baranisobas ridibundus

| PRJEB78758 | ENA

Chroicocephalus ridibundus

Project description:Chroicocephalus ridibundus overview

| PRJNA924877 | ENA

Tropheryma whipplei proteome - Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme

Project description:Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme. Testing systematic exchanges of nucleotides over long stretches produces inversed RNA pieces (here named “swinger” RNA) differing from their template DNA. These may explain some trashed data. Here analyses of genomic, transcriptomic and proteomic data of the pathogenic Tropheryma whipplei according to canonical genomic, transcriptomic and translational 'rules' resulted in trashing 58.9% of DNA, 37.7% RNA and about 85% of mass spectra (corresponding to peptides). In the trash, we found numerous DNA/RNA fragments compatible with “swinger” polymerization. Genomic sequences covered by «swinger» DNA and RNA are 3X more frequent than expected by chance and explained 12.4 and 20.8% of the rejected DNA and RNA sequences, respectively. As for peptides, several match with “swinger” RNAs, including some chimera, translated from both regular, and «swinger» transcripts, notably for ribosomal RNAs. Congruence of DNA, RNA and peptides resulting from the same swinging process suggest that systematic nucleotide exchanges increase coding potential, and may add to evolutionary diversification of bacterial populations.

2017-12-18 | PXD006238 | Pride

tfGorAlbo

Project description:Gordius_albopunctatus, genomic and transcriptomic data

| PRJEB78907 | ENA

jsPelNoct

Project description:Pelagia noctiluca, genomic and transcriptomic data

| PRJEB71880 | ENA

idSceNota

Project description:Scellus notatus, genomic and transcriptomic data

| PRJEB74676 | ENA

icColElon

Project description:Colydium elongatum, genomic and transcriptomic data