IlBriCirc
Ontology highlight
ABSTRACT:
PROVIDER: PRJEB80939 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| Other | ||||
| ERR13802632_1.fastq.gz | Fastqsanger.gz | |||
| ERR13802632_2.fastq.gz | Fastqsanger.gz | |||
| ERR13800489.fastq.gz | Fastqsanger.gz | |||
| ERR13800490.fastq.gz | Fastqsanger.gz |
Items per page: 5 1 - 5 of 5 |
Similar Datasets
Project description:Brintesia circe (great banded grayling), genomic and transcriptomic data
| PRJEB80938 | ENA
Project description:RNA-seq data of non-pregnant and peri-implantation stage nine-banded armadillo (Dasypus novemcinctus) uterus
2020-07-01 | GSE120510 | GEO
Project description:Genome-wide transcription profiles analysis of the heat-shocked wild-type strain under moderate (40¡C) and severe heat stress (50¡C) revealed that a large number of genes are differentially expressed after heat shock. 358 genes were up-regulated and 420 were down-regulated in response to moderate heat shock 35 (40¡C) in C. glutamicum. Our results confirmed the HrcA/CIRCE-dependent and HspR/HAIR-dependent up-regulation of chaperones following heat shock. Other genes including COG groups related to macromolecule biosynthesis and several transcriptional regulators (COG class K) were up-regulated, explaining the large number of genes affected by heat shock. Mutants having deletions in the hrcA or hspR regulators were constructed, which allowed the complete identification of the genes controlled by those systems. The up- or down-regulation of several genes observed in the microarray experiments was validated by Northern analyses and quantitative (real-time) PCR. These analyses showed the heat shock intensity-dependent response (differential response) presented by the HspR/HAIR system, in contrast with the non-differential response shown by the HrcA/CIRCE-regulated genes.
2008-12-10 | E-MTAB-66 | biostudies-arrayexpress
Project description:We studied a Norwegian metapopulation of grayling, a spring-spawning freshwater salmonid fish with high homing propensity that has undergone contemporary evolution of early life-history in response to temperature. Samples derived from four spawning sites in four grayling sub-populations in Lake Lesjaskogsvatnet (62 14'N 8 25'E) in southern Norway. Adult grayling were captured at the four spawning sites, stripped of gametes and fertilized eggs were reared in two temperature treatments in common garden conditions as to represent lower and upper temperatures experienced by developing grayling larvae in nature. Proteins were isolated using a standard sodium dodecyl sulphate (SDS)-based extraction method. For trypsin digestion and peptide-level iTRAQ labeling, samples were peptide-labeled with isobaric tags by iTRAQ reagents (4-plex, Applied Biosystems) following the manufacturer's instructions. To clean and fractionate each sample we employed an isotope coded affinity tag procedure (ICAT) using the ICAT Cation Exchange Buffer Pack - Cation Exchange Cartridge system (Applied Biosystems). Four peptide fractions were collected using four concentrations of the elution buffer (50 mM, 100 mM, 150 mM, and 350 mM KH2PO4). Peptides were desalted using C18 macrospin columns (The Nest Group, Southborough, MA). For LC-MS/MS, peptides were separated by reversed-phase chromatography using an Easy-nLC II nanoflow system connected to an Orbitrap Velos mass spectrometer (Thermo Fisher Scientific, Bremen, Germany). Peptides were separated at a flow rate of 300 nl/min with 102 min gradients as follows: initially 2 % B to 25% B (60 min), 40% B (90 min), and 100% B (92-102 min). Protein identification and quantification were done using the ProteinPilotTM v.4 program (Applied Biosystems). In the parameters we selected the Paragon method, iodoacetamide for cys alkylation, trypsin for digestion, thorough ID for search effort, biological modifications and amino acid substitutions for ID focus, and bias correction in quantification. As a search database we used all Atlantic salmon (Salmo salar) submitted in the UniProt database (www.uniprot.org) up to March 2012. To evaluate the accuracy of the quantification method, we also did a pilot experiment. We spiked the six-protein mix provided with the iTRAQ kit in ratios 1:3:10 in samples that contained an equal amount of protein extract from a grayling embryo. Then we labeled each sample with a different isobaric tag (114:115:116, respectively). The aim was to employ the proposed methodology to quantify a subset of proteins that change across samples in a cloud of background proteins that remain unchanged and these data are also provided in the dataset.
2014-05-28 | PXD000368 | Pride
Project description:Thymallus arcticus (Arctic grayling), fThyArc1
| PRJNA1125470 | ENA