Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

MinION nanopore sequencer performance analysis

ABSTRACT: A reference dataset for phage M13 dsDNA generated with the Oxford Nanopore MinION

PROVIDER: PRJEB8318 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR739513.fastq.gz	Fastqsanger.gz
	ERR739513_1.fastq.gz	Fastqsanger.gz
	ERR739513_2.fastq.gz	Fastqsanger.gz
	ERR739514.fastq.gz	Fastqsanger.gz
	ERR739514_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 9

Similar Datasets

Oxford Nanopore MinION sequencing of multiplex PCR amplified, pathogen-spiked blood and plasma samples

Project description:To evaluate targeted MinION next generation sequencing as a diagnostic method for detection of pathogens in human blood and plasma, human blood or plasma samples were spiked with measured amounts of viruses, bacteria, protozoan parasites or tested pathogen-free as negative controls. Nucleic acid was extracted from samples and PCR amplification performed in multiplex primer pools with a procedure described in ArrayExpress experiment submission ID 18379. The PCR products were used for library preparation. The libraries sequenced on an Oxford Nanopore MinION. The passed reads aligned with a custom reference file to determine the identity of the pathogen in the sample.

2024-06-08 | E-MTAB-14011 | biostudies-arrayexpress

Improved data analysis for the MinION nanopore sequencer.

Project description: Not available

| S-EPMC4907500 | biostudies-literature

ONT MinION sequencer: WGS of Neisseria gonorrhoeae

Project description:Golparian et al. WGS of Neisseria gonorrhoeae using MinION sequencer (Oxford Nanopore Technologies).

| PRJEB25703 | ENA

Detecting EGFP RNA transcripts by Oxford Nanopore Technology

Project description:We performed direct cDNA sequencing in HeLa GFP∆Promoter cells by Oxford Nanopore Technology (ONT) on a MinION device to detect EGFP RNA levels after DSB induction.

2026-05-15 | E-MTAB-16605 | biostudies-arrayexpress

Systematic and stochastic influences on the performance of the MinION nanopore sequencer across a range of nucleotide bias.

Project description: Not available

| S-EPMC5816649 | biostudies-literature

Solanum americanum clone 954750186 Nanopore MinION RenSeq

Project description:Oxford Nanopore MinION resistance-gene enrichment sequencing of Solanum americanum clone 954750186

| PRJEB18993 | ENA

Resolving plasmid structures in <i>Enterobacteriaceae</i> using the MinION nanopore sequencer: assessment of MinION and MinION/Illumina hybrid data assembly approaches.

Project description: Not available

| S-EPMC5610714 | biostudies-literature

Identification of non-model mammal species using the MinION DNA sequencer from Oxford Nanopore.

Project description: Not available