Project description:<p>Polygonum minus Huds., commonly referred to as kesum, is a traditional medicinal plant in Malaysia known for its unique fragrance attributed to its volatile compounds. The essential oil extracted from <em>P. minus</em> displayed various benefits, comprised of antioxidant, antimicrobial and anticancer properties. Therefore, to identify volatile metabolites associated with such biological activities, we performed untargeted metabolite analysis on the essential oil extracted from <em>P. minus</em> leaf tissue. After the leaf samples were collected from the INBIOSIS experimental plot, a 6-hour hydro-distillation procedure was performed to extract the essential oil, which was then subjected to GC-MS analysis. Thus, this data could provide a reference and benchmark for researchers conducting analyses on volatile compounds in <em>P. minus</em>.</p>
Project description:Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme. Testing systematic exchanges of nucleotides over long stretches produces inversed RNA pieces (here named “swinger” RNA) differing from their template DNA. These may explain some trashed data. Here analyses of genomic, transcriptomic and proteomic data of the pathogenic Tropheryma whipplei according to canonical genomic, transcriptomic and translational 'rules' resulted in trashing 58.9% of DNA, 37.7% RNA and about 85% of mass spectra (corresponding to peptides). In the trash, we found numerous DNA/RNA fragments compatible with “swinger” polymerization. Genomic sequences covered by «swinger» DNA and RNA are 3X more frequent than expected by chance and explained 12.4 and 20.8% of the rejected DNA and RNA sequences, respectively. As for peptides, several match with “swinger” RNAs, including some chimera, translated from both regular, and «swinger» transcripts, notably for ribosomal RNAs. Congruence of DNA, RNA and peptides resulting from the same swinging process suggest that systematic nucleotide exchanges increase coding potential, and may add to evolutionary diversification of bacterial populations.